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PDBsum entry 1v0g
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DNA binding protein
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PDB id
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1v0g
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References listed in PDB file
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Key reference
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Title
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Theoretical structure of dnaa,A dna binding protein of ralstonia solanacearum
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Authors
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S.Mahanta,
C.Baruah,
J.Deka,
A.K.Buragohain.
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Ref.
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TO BE PUBLISHED ...
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Secondary reference #1
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Title
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Genome sequence of the plant pathogen ralstonia solanacearum.
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Authors
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M.Salanoubat,
S.Genin,
F.Artiguenave,
J.Gouzy,
S.Mangenot,
M.Arlat,
A.Billault,
P.Brottier,
J.C.Camus,
L.Cattolico,
M.Chandler,
N.Choisne,
C.Claudel-Renard,
S.Cunnac,
N.Demange,
C.Gaspin,
M.Lavie,
A.Moisan,
C.Robert,
W.Saurin,
T.Schiex,
P.Siguier,
P.Thébault,
M.Whalen,
P.Wincker,
M.Levy,
J.Weissenbach,
C.A.Boucher.
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Ref.
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Nature, 2002,
415,
497-502.
[DOI no: ]
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PubMed id
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Figure 1.
Figure 1: General organization of the R. solanacearum strain
GMI1000 genome. The two circular replicons are represented
linearly starting from base number 1 (a, chromosome; b,
megaplasmid). Kilobases are indicated along the top. For each
replicon the distribution of protein-coding genes (line 1),
insertion sequences (line 2), ORFs from other genetically mobile
elements (line 4) and ACURs (line 3) are represented. The
percentage of G+C variation (from the average; red line) along
the length of the genome using a 2,500-bp window is shown (line
5). Colours on line 1 correspond to the main classes of genes
(the colour code is available at
http://sequence.toulouse.inra.fr/R.solanacearum.html). Green
triangles point towards the positions of rDNA loci; red stars
locate the major bacteriophage remnants; the green star
corresponds to the position of the conjugative transposon. The
yellow circle indicates the position of the hrp locus and the
blue circle indicates the tandem duplication of a 31-kb region.
The blue box in a delineates the region of the genome enlarged
in Fig. 2.
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Figure 2.
Figure 2: Enlarged view of part of the chromosome. This
figure reveals the mosaic structure of the genome. ACURs (narrow
yellow rectangles) alternate with genes from mobile genetic
elements (large red rectangles with insertion sequences shown in
striped white and red rectangles) and with genes that fit the
standard Markov model for R. solanacearum genes. An Ala-tRNA
gene is at the end of the last ACUR. This region contains genes
encoding two candidate type-III secreted effectors (RS02429 and
RS02460), three haemagglutinin-related proteins (RS00436,
RS02405 and RS5936) and a Vgr-related protein (RS02437 and
RS02439) inactivated by insertion of ISRso1. Colour codes for
other genes are given at the bottom of the figure and correspond
to the main classes defined in the nomenclature of ref. 46.
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The above figures are
reproduced from the cited reference
with permission from Macmillan Publishers Ltd
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