PDBsum entry 1uzj

Tunnel analysis for: 1uzj calculated with

MOLE 2.0

PDB id

1uzj

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.29

1.51

25.8

-0.54

-0.41

5.8

88

2

1

2

3

2

5

2

2

1.65

2.22

26.5

-0.52

-0.42

5.0

84

2

1

3

5

3

6

2

3

1.29

1.51

31.7

-1.58

-0.42

15.7

84

1

6

6

4

1

3

1

4

1.70

1.82

32.4

-1.32

-0.43

12.6

82

1

6

7

6

2

4

1

5

1.29

1.51

43.0

-0.59

-0.38

9.5

83

2

4

6

8

3

6

2

6

1.76

2.02

43.7

-0.58

-0.41

8.5

81

2

4

8

10

4

7

2

7

1.29

1.51

55.8

-0.71

-0.29

13.9

81

6

4

5

10

2

6

2

8

1.76

2.01

56.5

-0.68

-0.31

12.2

80

6

4

6

12

3

7

2

9

1.85

2.01

16.2

-0.74

-0.45

6.9

87

1

1

3

5

1

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.