spacer
spacer

PDBsum entry 1un6

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1un6 calculated with MOLE 2.0 PDB id
1un6
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.58 1.58 28.5 -1.47 -0.59 21.3 74 2 2 0 0 1 1 0  G 7 F G 8 F C 9 F C 12 F G 110 F C 111 F C 112 F
MG 304 F
2 2.97 3.15 31.0 -1.39 -0.70 16.6 74 1 1 0 0 0 0 0  G 66 F C 67 F C 68 F U 69 F G 70 F G 99 F A 100 F
A 101 F U 102 F A 103 F C 104 F MG 305 F
3 2.34 2.59 31.6 -1.41 -0.04 16.1 70 5 1 2 1 3 2 0  C 12 F G 70 F G 71 F C 79 F G 99 F A 100 F C 111
F C 112 F
4 2.40 2.56 32.0 -1.82 -0.79 14.7 82 4 2 3 0 0 1 0  G 71 F U 72 F U 73 F A 74 F C 79 F G 99 F A 100 F
5 2.42 2.58 37.1 -1.64 -0.83 14.4 84 3 2 4 0 0 1 0  G 71 F U 72 F U 73 F A 74 F C 79 F G 99 F A 100 F
6 3.03 3.16 26.9 -0.80 -0.51 6.7 82 2 0 3 2 0 1 0  G 66 E C 67 E C 68 E U 69 E G 71 E U 72 E U 73 E
A 74 E A 101 E U 102 E A 103 E C 104 E
7 2.55 2.59 30.8 -1.36 -0.72 9.4 84 2 0 3 0 0 1 0  G 66 E C 67 E C 68 E U 69 E G 71 E U 72 E U 73 E
A 74 E A 101 E U 102 E A 103 E C 104 E
8 1.34 1.48 27.9 -0.62 -0.29 7.1 65 1 0 0 1 1 0 0  U 76 F A 77 F C 78 F C 79 F G 83 F A 85 F A 86 F
C 94 F C 95 F U 96 F G 97 F G 98 F MG 302 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer