 |
PDBsum entry 1uk2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1uk2 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1uk2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
8 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.16 |
2.16 |
28.8 |
-1.55 |
-0.68 |
17.9 |
86 |
|
5 |
4 |
3 |
2 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
2.03 |
2.03 |
29.4 |
-1.76 |
-0.65 |
20.4 |
86 |
4 |
4 |
3 |
2 |
2 |
0 |
0 |
|
|
3 |
 |
2.12 |
2.12 |
30.5 |
-1.32 |
-0.69 |
14.7 |
86 |
4 |
1 |
2 |
1 |
1 |
0 |
0 |
|
|
4 |
 |
1.97 |
1.97 |
31.1 |
-1.37 |
-0.68 |
14.8 |
86 |
4 |
1 |
2 |
1 |
1 |
0 |
0 |
|
|
5 |
 |
2.12 |
2.12 |
31.9 |
-1.50 |
-0.70 |
16.5 |
88 |
5 |
4 |
3 |
2 |
1 |
0 |
0 |
|
|
6 |
 |
1.98 |
1.98 |
32.5 |
-1.58 |
-0.69 |
17.5 |
88 |
5 |
4 |
3 |
2 |
1 |
0 |
0 |
|
|
7 |
 |
2.15 |
2.15 |
34.2 |
-1.15 |
-0.49 |
15.7 |
78 |
4 |
3 |
2 |
3 |
4 |
0 |
0 |
|
 |
8 |
 |
2.01 |
2.01 |
34.7 |
-1.07 |
-0.44 |
15.0 |
78 |
4 |
3 |
2 |
3 |
4 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program