spacer
spacer

PDBsum entry 1uj3

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1uj3 calculated with MOLE 2.0 PDB id
1uj3
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.59 38.2 -1.78 -0.62 24.4 83 1 4 2 2 0 3 0  
2 1.36 2.77 44.9 -2.09 -0.72 24.1 89 2 4 3 1 0 2 0  
3 1.82 3.70 81.0 -2.17 -0.50 24.1 75 3 6 4 3 2 3 0  
4 1.35 2.82 86.9 -2.34 -0.64 24.1 84 5 7 6 1 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer