spacer
spacer

PDBsum entry 1uga

Go to PDB code: 
Top Page protein metals tunnels links
Tunnel analysis for: 1uga calculated with MOLE 2.0 PDB id
1uga
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.09 9.3 -0.17 0.20 12.3 76 2 0 1 1 2 1 0  
2 1.69 10.7 -0.59 -0.06 14.6 79 2 0 1 1 2 1 0  
3 2.11 12.0 0.26 0.39 11.4 80 2 0 1 3 2 1 0  
4 1.65 12.3 -0.18 -0.04 8.5 78 1 1 1 1 2 0 0  
5 1.62 18.3 -1.63 -0.21 21.5 78 4 1 1 0 2 0 0  
6 1.44 7.5 -1.40 -0.10 14.2 77 1 0 1 1 1 0 0  
7 1.30 11.0 1.12 0.05 2.0 91 1 0 1 4 0 0 0  
8 1.32 13.1 0.92 0.11 9.0 88 1 2 0 4 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer