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PDBsum entry 1ua0

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Top Page protein dna_rna ligands pores links
Pore analysis for: 1ua0 calculated with MOLE 2.0 PDB id
1ua0
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 1.61 28.2 -1.38 -0.62 9.1 82 2 0 2 0 1 1 0  DG 23 B DA 24 B DT 9 C DC 10 C DC 11 C DC 12 C
2 1.54 1.56 46.6 -1.75 -0.65 15.2 87 3 2 6 7 0 0 0  DT 25 B DG 26 B DG 27 B DT 2 C DG 3 C AF 333 C
3 1.54 1.55 56.3 -1.49 -0.50 14.2 80 3 2 3 6 1 0 0  DG 23 B DA 24 B DT 25 B DG 26 B DG 27 B DT 28 B
DT 2 C DG 3 C DC 6 C AF 333 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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