PDBsum entry 1u47 Go to PDB code:  Tunnel analysis for: 1u47 calculated with MOLE 2.0 PDB id 1u47 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.41 15.3 -0.88 -0.53 10.4 88 1 2 3 1 0 1 0   2 1.36 1.36 15.8 0.98 0.24 5.8 88 0 2 0 5 1 0 0   3 1.24 1.43 17.4 0.84 0.29 11.2 78 2 1 1 6 2 0 0   4 1.18 1.18 24.1 1.03 0.40 4.5 68 1 0 0 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.