spacer
spacer

PDBsum entry 1u45

Go to PDB code: 
Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 1u45 calculated with MOLE 2.0 PDB id
1u45
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 2.88 117.6 -1.39 -0.47 16.5 81 9 5 7 11 2 1 0  SO4 910 A MG 920 A DT 23 B DG 24 B DA 25 B DC 26
B DT 27 B DG 29 B DC 9 C DA 10 C DG 11 C DG 12 C
2 1.27 1.39 19.1 0.29 0.07 14.9 80 2 2 1 5 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer