PDBsum entry 1trm Go to PDB code:  Tunnel analysis for: 1trm calculated with MOLE 2.0 PDB id 1trm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.26 16.3 -1.05 -0.70 9.6 76 1 1 2 2 1 0 0  BEN 246 A 2 1.52 1.82 20.7 -1.88 -0.43 20.7 87 2 1 2 1 1 0 0   3 1.27 2.49 26.2 -1.63 -0.35 22.7 91 2 2 5 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.