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PDBsum entry 1tn1

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Tunnel analysis for: 1tn1 calculated with MOLE 2.0 PDB id
1tn1
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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18 tunnels, coloured by tunnel radius 16 tunnels, coloured by tunnel radius 16 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.88 8.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  18 G A,57 G A,58 1MA A,60 C A,61 C A
2 2.59 9.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 U A,47 U A,48 C A,49 5MC A,50 U A,59 U A,65 G A,
66 A A
3 1.91 12.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  47 U A,48 C A,49 5MC A,50 U A,51 G A,52 U A,53 G
A,57 G A,58 1MA A,59 U A,60 C A
4 1.90 12.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  18 G A,47 U A,52 U A,53 G A,57 G A,58 1MA A,59 U
A,60 C A
5 2.80 13.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 U A,7 U A,15 G A,16 H2U A,48 C A,49 5MC A,50 U
A,59 U A,60 C A,61 C A
6 2.57 14.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 U A,8 U A,47 U A,48 C A,49 5MC A,50 U A,59 U A,
66 A A,67 A A
7 1.75 15.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  23 A A,24 G A,25 C A,27 C A,42 G A,43 G A,77 SPM A
8 3.56 16.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 A A,6 U A,7 U A,48 C A,49 5MC A,50 U A,59 U A,
60 C A,61 C A,62 A A,64 A A,65 G A
9 3.53 17.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 G A,5 A A,6 U A,7 U A,48 C A,49 5MC A,50 U A,59
U A,60 C A,61 C A,62 A A,63 C A,64 A A,65 G A
10 1.80 18.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  24 G A,25 C A,26 M2G A,27 C A,28 C A,38 A A,39 PS
U A,40 5MC A,41 U A,42 G A,43 G A,77 SPM A
11 1.84 27.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  18 G A,48 C A,49 5MC A,50 U A,51 G A,52 U A,53 G
A,54 5MU A,57 G A,58 1MA A,59 U A,60 C A,61 C A
12 1.89 29.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 U A,18 G A,47 U A,48 C A,49 5MC A,50 U A,51 G A,
52 U A,53 G A,57 G A,58 1MA A,59 U A,60 C A,65 G
A,66 A A
13 1.89 35.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 U A,8 U A,18 G A,47 U A,48 C A,49 5MC A,50 U A,
51 G A,52 U A,53 G A,57 G A,58 1MA A,59 U A,60 C
A,66 A A,67 A A
14 1.64 36.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  24 G A,25 C A,26 M2G A,27 C A,28 C A,36 A A,37 YG
A,38 A A,39 PSU A,41 U A,42 G A,43 G A,77 SPM A
15 1.90 36.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 U A,7 U A,15 G A,16 H2U A,18 G A,49 5MC A,50 U
A,51 G A,52 U A,53 G A,57 G A,58 1MA A,59 U A,60
C A,61 C A
16 1.90 37.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 G A,5 A A,6 U A,7 U A,18 G A,49 5MC A,50 U A,51
G A,52 U A,53 G A,57 G A,58 1MA A,59 U A,60 C A,
61 C A,62 A A,63 C A,64 A A,65 G A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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