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PDBsum entry 1tlk

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Calmodulin-binding PDB id
1tlk

 

 

 

 

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Contents
Protein chain
103 a.a. *
Waters ×31
* Residue conservation analysis
PDB id:
1tlk
Name: Calmodulin-binding
Title: X-ray structure determination of telokin, thE C-terminal domain of myosin light chain kinase, at 2.8 angstroms resolution
Structure: Telokin. Chain: a. Engineered: yes
Source: Meleagris gallopavo. Turkey. Organism_taxid: 9103
Biol. unit: Dimer (from PQS)
Resolution:
2.80Å     R-factor:   0.184    
Authors: H.M.Holden,I.Rayment
Key ref:
H.M.Holden et al. (1992). X-ray structure determination of telokin, the C-terminal domain of myosin light chain kinase, at 2.8 A resolution. J Mol Biol, 227, 840-851. PubMed id: 1404391 DOI: 10.1016/0022-2836(92)90226-A
Date:
20-Jul-92     Release date:   31-Oct-93    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P56276  (MYLK_MELGA) -  Telokin from Meleagris gallopavo
Seq:
Struc:
154 a.a.
103 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.1.117  - Transferred entry: 2.7.11.18.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + [myosin light-chain] = ADP + [myosin light-chain] phosphate

+
=
+
      Cofactor: Calcium
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1016/0022-2836(92)90226-A J Mol Biol 227:840-851 (1992)
PubMed id: 1404391  
 
 
X-ray structure determination of telokin, the C-terminal domain of myosin light chain kinase, at 2.8 A resolution.
H.M.Holden, M.Ito, D.J.Hartshorne, I.Rayment.
 
  ABSTRACT  
 
The three-dimensional structure of telokin, an acidic protein identical to the C-terminal portion of smooth muscle myosin light chain kinase from turkey gizzard, has been determined at 2.8 A resolution and refined to a crystallographic R-factor of 19.5% for all measured X-ray data from 30 A to 2.8 A. Crystals used in the investigation belonged to the space group P3(2)21, with one molecule per asymmetric unit and unit cell dimensions of a = b = 64.4 A and c = 50.6 A. Telokin contains 154 amino acid residues, 103 of which were visible in the electron density map. The overall molecular fold of telokin consists of seven strands of antiparallel beta-pleated sheet that wrap around to form a barrel. There is also an extended tail of eight amino acid residues at the N terminus that does not participate in beta-sheet formation. The beta-barrel can be simply envisioned as two layers of beta-sheet, nearly parallel to one another, with one layer containing four and the other three beta-strands. This type of beta-barrel, as seen in telokin, was first observed for the CH2 domain of an immunoglobulin fragment Fc. Telokin is an intracellular protein and, as such, does not contain the disulphide linkage between beta-strands B and F normally observed in the immunoglobulin constant domains. It does, however, contain two cysteine amino acid residues (Cys63 and Cys115) that are situated at structurally identical positions to those forming the disulphide linkage in the immunoglobulin constant domain.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Schematic representation of the rrangement of regulatory and functional domains in smooth muscle yosin light chain kinase based on genetic and biochemical studies (Olsen et al., 1990) ad their relationship to telokin. The Figure shows the positins of the immunoglobuin-like sequence motifs types I and II) that are omologous to those observed in twitchin (Benian et al., 1989). t also ives the location in the sequnce of the catalytic and calmodulin binding domains (CAM). The segmen responsible for auto-inhibition o MLCK is ocated between residues 786 and 805 and overaps the calmodulin binding region (Ito et al., 1991).
Figure 10.
Figure 10. Superpsition of telokin and PapD. The superposition shown was generated as described for Fig. 7. X-ray co-ordinates for the PapD molecule were graciousl supplied by Dr Carl Briinden. Telokin and PapD are shown in continuous nd open bonds, respectivel.
 
  The above figures are reprinted by permission from Elsevier: J Mol Biol (1992, 227, 840-851) copyright 1992.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20223221 K.N.Parent, R.Khayat, L.H.Tu, M.M.Suhanovsky, J.R.Cortines, C.M.Teschke, J.E.Johnson, and T.S.Baker (2010).
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  Structure, 18, 390-401.
PDB codes: 3iyh 3iyi
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Kinase-related protein/telokin inhibits Ca2+-independent contraction in Triton-skinned guinea pig taenia coli.
  Biochem J, 429, 291-302.  
20196616 Y.Mabuchi, K.Mabuchi, W.F.Stafford, and Z.Grabarek (2010).
Modular structure of smooth muscle Myosin light chain kinase: hydrodynamic modeling and functional implications.
  Biochemistry, 49, 2903-2917.  
20080685 Y.Yang, P.Xie, Y.Opatowsky, and J.Schlessinger (2010).
Direct contacts between extracellular membrane-proximal domains are required for VEGF receptor activation and cell signaling.
  Proc Natl Acad Sci U S A, 107, 1906-1911.
PDB code: 3kvq
19466753 C.A.Otey, R.Dixon, C.Stack, and S.M.Goicoechea (2009).
Cytoplasmic Ig-domain proteins: cytoskeletal regulators with a role in human disease.
  Cell Motil Cytoskeleton, 66, 618-634.  
18180288 R.D.Dixon, D.K.Arneman, A.S.Rachlin, N.R.Sundaresan, M.J.Costello, S.L.Campbell, and C.A.Otey (2008).
Palladin is an actin cross-linking protein that uses immunoglobulin-like domains to bind filamentous actin.
  J Biol Chem, 283, 6222-6231.  
17192269 A.Ababou, M.Gautel, and M.Pfuhl (2007).
Dissecting the N-terminal myosin binding site of human cardiac myosin-binding protein C. Structure and myosin binding of domain C2.
  J Biol Chem, 282, 9204-9215.
PDB code: 1pd6
17662946 S.Yuzawa, Y.Opatowsky, Z.Zhang, V.Mandiyan, I.Lax, and J.Schlessinger (2007).
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PDB codes: 2e9w 2ec8
17011580 A.L.Stiegler, S.J.Burden, and S.R.Hubbard (2006).
Crystal structure of the agrin-responsive immunoglobulin-like domains 1 and 2 of the receptor tyrosine kinase MuSK.
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PDB code: 2iep
16760466 L.G.Randles, I.Lappalainen, S.B.Fowler, B.Moore, S.J.Hamill, and J.Clarke (2006).
Using model proteins to quantify the effects of pathogenic mutations in Ig-like proteins.
  J Biol Chem, 281, 24216-24226.  
16354304 B.A.Manjasetty, F.H.Niesen, C.Scheich, Y.Roske, F.Goetz, J.Behlke, V.Sievert, U.Heinemann, and K.Büssow (2005).
X-ray structure of engineered human Aortic Preferentially Expressed Protein-1 (APEG-1).
  BMC Struct Biol, 5, 21.
PDB code: 1u2h
16341830 M.Marino, D.I.Svergun, L.Kreplak, P.V.Konarev, B.Maco, D.Labeit, and O.Mayans (2005).
Poly-Ig tandems from I-band titin share extended domain arrangements irrespective of the distinct features of their modular constituents.
  J Muscle Res Cell Motil, 26, 355-365.  
15625712 S.Covaceuszach, A.Cattaneo, and D.Lamba (2005).
Neutralization of NGF-TrkA receptor interaction by the novel antagonistic anti-TrkA monoclonal antibody MNAC13: a structural insight.
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PDB code: 1seq
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PDB code: 1rhf
15304650 V.A.Streltsov, J.N.Varghese, J.A.Carmichael, R.A.Irving, P.J.Hudson, and S.D.Nuttall (2004).
Structural evidence for evolution of shark Ig new antigen receptor variable domain antibodies from a cell-surface receptor.
  Proc Natl Acad Sci U S A, 101, 12444-12449.
PDB codes: 1ver 1ves
11329277 D.Funabara, S.Kinoshita, S.Watabe, M.J.Siegman, T.M.Butler, and D.J.Hartshorne (2001).
Phosphorylation of molluscan twitchin by the cAMP-dependent protein kinase.
  Biochemistry, 40, 2087-2095.  
  11408583 G.Schürmann, J.Haspel, M.Grumet, and H.P.Erickson (2001).
Cell adhesion molecule L1 in folded (horseshoe) and extended conformations.
  Mol Biol Cell, 12, 1765-1773.  
11574465 M.Kvansakul, M.Hopf, A.Ries, R.Timpl, and E.Hohenester (2001).
Structural basis for the high-affinity interaction of nidogen-1 with immunoglobulin-like domain 3 of perlecan.
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PDB code: 1gl4
11525170 O.Mayans, J.Wuerges, S.Canela, M.Gautel, and M.Wilmanns (2001).
Structural evidence for a possible role of reversible disulphide bridge formation in the elasticity of the muscle protein titin.
  Structure, 9, 331-340.
PDB code: 1g1c
11553913 T.Wakayama, K.Ohashi, K.Mizuno, and S.Iseki (2001).
Cloning and characterization of a novel mouse immunoglobulin superfamily gene expressed in early spermatogenic cells.
  Mol Reprod Dev, 60, 158-164.  
10830168 A.N.Plotnikov, S.R.Hubbard, J.Schlessinger, and M.Mohammadi (2000).
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  Cell, 101, 413-424.
PDB codes: 1ev2 1evt
10618369 D.J.Stauber, A.D.DiGabriele, and W.A.Hendrickson (2000).
Structural interactions of fibroblast growth factor receptor with its ligands.
  Proc Natl Acad Sci U S A, 97, 49-54.
PDB code: 1djs
10799512 D.Lu, P.Kussie, B.Pytowski, K.Persaud, P.Bohlen, L.Witte, and Z.Zhu (2000).
Identification of the residues in the extracellular region of KDR important for interaction with vascular endothelial growth factor and neutralizing anti-KDR antibodies.
  J Biol Chem, 275, 14321-14330.  
10830169 J.Freigang, K.Proba, L.Leder, K.Diederichs, P.Sonderegger, and W.Welte (2000).
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  Cell, 101, 425-433.
PDB code: 1cs6
10490103 A.N.Plotnikov, J.Schlessinger, S.R.Hubbard, and M.Mohammadi (1999).
Structural basis for FGF receptor dimerization and activation.
  Cell, 98, 641-650.
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  10396141 D.O.Fürst, W.M.Obermann, and P.F.van der Ven (1999).
Structure and assembly of the sarcomeric M band.
  Rev Physiol Biochem Pharmacol, 138, 163-202.  
  10396143 G.M.Benian, A.Ayme-Southgate, and T.L.Tinley (1999).
The genetics and molecular biology of the titin/connectin-like proteins of invertebrates.
  Rev Physiol Biochem Pharmacol, 138, 235-268.  
10404599 M.T.Huhtala, O.T.Pentikäinen, and M.S.Johnson (1999).
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  Structure, 7, 699-709.
PDB code: 1qct
10026225 P.Lin, K.Luby-Phelps, and J.T.Stull (1999).
Properties of filament-bound myosin light chain kinase.
  J Biol Chem, 274, 5987-5994.  
10393930 V.Ruotsalainen, P.Ljungberg, J.Wartiovaara, U.Lenkkeri, M.Kestilä, H.Jalanko, C.Holmberg, and K.Tryggvason (1999).
Nephrin is specifically located at the slit diaphragm of glomerular podocytes.
  Proc Natl Acad Sci U S A, 96, 7962-7967.  
  9450954 P.M.Yip, X.Zhao, A.M.Montgomery, and C.H.Siu (1998).
The Arg-Gly-Asp motif in the cell adhesion molecule L1 promotes neurite outgrowth via interaction with the alphavbeta3 integrin.
  Mol Biol Cell, 9, 277-290.  
9488719 R.Urfer, P.Tsoulfas, L.O'Connell, J.A.Hongo, W.Zhao, and L.G.Presta (1998).
High resolution mapping of the binding site of TrkA for nerve growth factor and TrkC for neurotrophin-3 on the second immunoglobulin-like domain of the Trk receptors.
  J Biol Chem, 273, 5829-5840.  
9452434 T.Davis-Smyth, L.G.Presta, and N.Ferrara (1998).
Mapping the charged residues in the second immunoglobulin-like domain of the vascular endothelial growth factor/placenta growth factor receptor Flt-1 required for binding and structural stability.
  J Biol Chem, 273, 3216-3222.  
9556631 X.Wu, T.A.Haystead, R.K.Nakamoto, A.V.Somlyo, and A.P.Somlyo (1998).
Acceleration of myosin light chain dephosphorylation and relaxation of smooth muscle by telokin. Synergism with cyclic nucleotide-activated kinase.
  J Biol Chem, 273, 11362-11369.  
9251240 A.V.Vorotnikov (1997).
Kinase-related protein: a smooth muscle myosin-binding protein.
  Int J Biochem Cell Biol, 29, 727-730.  
9393862 C.Wiesmann, G.Fuh, H.W.Christinger, C.Eigenbrot, J.A.Wells, and A.M.de Vos (1997).
Crystal structure at 1.7 A resolution of VEGF in complex with domain 2 of the Flt-1 receptor.
  Cell, 91, 695-704.
PDB code: 1flt
9442878 D.J.Leahy (1997).
Implications of atomic-resolution structures for cell adhesion.
  Annu Rev Cell Dev Biol, 13, 363-393.  
9312155 D.L.Silver, A.V.Vorotnikov, D.M.Watterson, V.P.Shirinsky, and J.R.Sellers (1997).
Sites of interaction between kinase-related protein and smooth muscle myosin.
  J Biol Chem, 272, 25353-25359.  
9283094 F.Rusconi, M.C.Potier, J.P.Le Caer, J.M.Schmitter, and J.Rossier (1997).
Characterization of the chicken telokin heterogeneity by time-of-flight mass spectrometry.
  Biochemistry, 36, 11021-11026.  
9442880 F.S.Walsh, and P.Doherty (1997).
Neural cell adhesion molecules of the immunoglobulin superfamily: role in axon growth and guidance.
  Annu Rev Cell Dev Biol, 13, 425-456.  
  8947027 A.Bateman, M.Jouet, J.MacFarlane, J.S.Du, S.Kenwrick, and C.Chothia (1996).
Outline structure of the human L1 cell adhesion molecule and the sites where mutations cause neurological disorders.
  EMBO J, 15, 6050-6059.  
  9003756 B.Kobe, J.Heierhorst, S.C.Feil, M.W.Parker, G.M.Benian, K.R.Weiss, and B.E.Kemp (1996).
Giant protein kinases: domain interactions and structural basis of autoregulation.
  EMBO J, 15, 6810-6821.
PDB codes: 1koa 1kob
8922113 G.M.Benian, X.Tang, and T.L.Tinley (1996).
Twitchin and related giant Ig superfamily members of C. elegans and other invertebrates.
  Adv Biophys, 33, 183-198.  
8805507 M.J.Sippl, and H.Flöckner (1996).
Threading thrills and threats.
  Structure, 4, 15-19.  
8970726 M.Raghavan, and P.J.Bjorkman (1996).
Fc receptors and their interactions with immunoglobulins.
  Annu Rev Cell Dev Biol, 12, 181-220.  
8673600 N.K.Thomsen, V.Soroka, P.H.Jensen, V.Berezin, V.V.Kiselyov, E.Bock, and F.M.Poulsen (1996).
The three-dimensional structure of the first domain of neural cell adhesion molecule.
  Nat Struct Biol, 3, 581-585.
PDB codes: 1ncm 2ncm
  8741844 S.H.Seiler, D.A.Fischman, and L.A.Leinwand (1996).
Modulation of myosin filament organization by C-protein family members.
  Mol Biol Cell, 7, 113-127.  
8805538 S.Improta, A.S.Politou, and A.Pastore (1996).
Immunoglobulin-like modules from titin I-band: extensible components of muscle elasticity.
  Structure, 4, 323-337.
PDB codes: 1tit 1tiu
8900139 T.V.Petrova, T.Takagi, and J.A.Cox (1996).
Phosphorylation of the IQ domain regulates the interaction between Ca2+-vector protein and its target in Amphioxus.
  J Biol Chem, 271, 26646-26652.  
7638192 A.J.Murray, S.J.Lewis, A.N.Barclay, and R.L.Brady (1995).
One sequence, two folds: a metastable structure of CD2.
  Proc Natl Acad Sci U S A, 92, 7337-7341.
PDB code: 1cdc
  7896840 J.P.Jin (1995).
Cloned rat cardiac titin class I and class II motifs. Expression, purification, characterization, and interaction with F-actin.
  J Biol Chem, 270, 6908-6916.  
7624321 L.Shapiro, P.D.Kwong, A.M.Fannon, D.R.Colman, and W.A.Hendrickson (1995).
Considerations on the folding topology and evolutionary origin of cadherin domains.
  Proc Natl Acad Sci U S A, 92, 6793-6797.  
  7744002 M.Gautel, O.Zuffardi, A.Freiburg, and S.Labeit (1995).
Phosphorylation switches specific for the cardiac isoform of myosin binding protein-C: a modulator of cardiac contraction?
  EMBO J, 14, 1952-1960.  
7613868 M.Pfuhl, and A.Pastore (1995).
Tertiary structure of an immunoglobulin-like domain from the giant muscle protein titin: a new member of the I set.
  Structure, 3, 391-401.
PDB codes: 1tnm 1tnn
7615513 R.W.Nelson, P.A.Bates, and U.Rutishauser (1995).
Protein determinants for specific polysialylation of the neural cell adhesion molecule.
  J Biol Chem, 270, 17171-17179.  
7755987 T.C.Keller (1995).
Structure and function of titin and nebulin.
  Curr Opin Cell Biol, 7, 32-38.  
7588733 W.M.Obermann, U.Plessmann, K.Weber, and D.O.Fürst (1995).
Purification and biochemical characterization of myomesin, a myosin-binding and titin-binding protein, from bovine skeletal muscle.
  Eur J Biochem, 233, 110-115.  
  7535614 J.Bajorath, R.J.Peach, and P.S.Linsley (1994).
Immunoglobulin fold characteristics of B7-1 (CD80) and B7-2 (CD86).
  Protein Sci, 3, 2148-2150.  
  8397135 G.M.Benian, S.W.L'Hernault, and M.E.Morris (1993).
Additional sequence complexity in the muscle gene, unc-22, and its encoded protein, twitchin, of Caenorhabditis elegans.
  Genetics, 134, 1097-1104.  
  8404852 M.Gautel, K.Leonard, and S.Labeit (1993).
Phosphorylation of KSP motifs in the C-terminal region of titin in differentiating myoblasts.
  EMBO J, 12, 3827-3834.  
8126220 P.Vibert, S.M.Edelstein, L.Castellani, and B.W.Elliott (1993).
Mini-titins in striated and smooth molluscan muscles: structure, location and immunological crossreactivity.
  J Muscle Res Cell Motil, 14, 598-607.  
8227129 T.Okagaki, F.E.Weber, D.A.Fischman, K.T.Vaughan, T.Mikawa, and F.C.Reinach (1993).
The major myosin-binding domain of skeletal muscle MyBP-C (C protein) resides in the COOH-terminal, immunoglobulin C2 motif.
  J Cell Biol, 123, 619-626.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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