spacer
spacer

PDBsum entry 1thj

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1thj calculated with MOLE 2.0 PDB id
1thj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.55 5.4 0.08 0.02 7.8 85 1 1 1 2 1 0 0  
2 2.30 11.1 -0.35 0.10 10.8 87 0 2 1 2 1 0 0  
3 1.44 13.8 -1.01 -0.50 12.0 89 1 3 2 1 1 0 0  
4 1.43 13.0 -0.12 -0.38 3.5 92 0 1 2 2 1 0 0  
5 1.45 15.8 -1.17 -0.51 13.6 90 1 3 2 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer