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PDBsum entry 1tb6

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1tb6 calculated with MOLE 2.0 PDB id
1tb6
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.53 21.2 -1.64 -0.61 21.6 72 4 4 0 0 3 0 0  
2 1.16 1.16 31.2 -0.54 -0.34 7.3 81 1 1 6 5 2 1 0  
3 1.16 1.16 34.2 -0.66 -0.28 5.6 78 2 1 6 5 3 1 0  
4 1.17 1.17 44.7 0.07 -0.20 2.8 79 1 0 6 9 4 1 0  MPD 865 I
5 1.21 1.21 17.4 -0.30 0.05 13.6 59 1 3 1 1 4 2 1  
6 1.29 1.44 24.1 -0.25 0.19 11.2 80 3 1 1 6 3 0 0  MPD 782 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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