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PDBsum entry 1t03

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1t03 calculated with MOLE 2.0 PDB id
1t03
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.28 34.4 -1.66 -0.80 17.3 87 3 1 2 0 0 0 0  DC 803 P DT 806 P DC 807 P DC 808 P DT 724 T DG
725 T
2 1.30 1.30 94.3 -1.13 -0.55 12.9 73 7 5 1 2 5 2 0  DC 807 P DC 808 P DT 810 P DG 811 P DT 812 P DT
813 P DC 814 P DG 710 T DG 719 T DG 720 T DG 721
T DA 722 T DC 723 T
3 1.75 1.94 96.3 -1.04 -0.32 17.3 73 7 6 1 4 6 3 0  DC 803 P DT 813 P DC 814 P DG 710 T DA 718 T DG
719 T DG 720 T DG 721 T DA 722 T DC 723 T
4 1.35 1.57 26.8 0.34 -0.05 1.9 77 0 0 3 3 2 2 1  
5 2.65 2.91 31.8 -2.03 -0.46 19.8 79 3 2 3 0 1 0 0  
6 1.27 1.63 45.2 -1.01 -0.49 9.3 90 2 2 4 3 1 1 0  
7 1.35 1.57 49.2 -0.42 -0.29 8.1 89 2 2 4 3 1 2 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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