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PDBsum entry 1sot
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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1sot calculated with MOLE 2.0 PDB id
1sot
Pores calculated on whole structure Pores calculated excluding ligands
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8 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.47 25.3 2.18 0.51 1.4 92 0 0 1 11 0 0 0  MSE 319 A
2 1.21 1.21 25.6 2.97 0.88 0.9 101 0 0 1 12 0 0 0  MSE 319 A
3 1.19 1.58 27.3 2.54 0.66 1.6 93 0 1 1 13 0 0 0  
4 1.20 1.58 27.6 3.27 0.99 1.2 100 0 1 1 14 0 0 0  
5 1.79 2.59 37.4 1.07 0.18 5.6 87 1 1 2 10 1 0 0  MSE 319 C
6 1.42 3.83 44.2 1.38 0.30 4.1 93 1 1 4 11 0 0 0  MSE 319 B
7 1.59 1.87 46.0 -0.77 -0.19 8.2 79 2 2 5 5 2 3 0  MSE 213 A
8 1.14 1.59 57.3 -1.04 -0.56 13.7 96 1 3 6 3 0 0 0  
9 1.16 1.64 72.6 0.39 -0.08 5.7 89 2 4 2 10 1 0 0  MSE 319 A
10 1.17 1.54 85.6 -1.19 -0.56 13.2 88 1 3 8 4 2 0 0  
11 1.41 1.40 197.9 -0.72 -0.34 10.6 84 3 8 12 14 7 1 0  MSE 319 A
12 1.19 1.37 193.9 -0.15 -0.05 9.8 85 4 4 9 18 5 1 0  MSE 319 C
13 1.16 1.23 221.5 -0.99 -0.29 13.3 81 7 7 11 12 6 4 0  MSE 213 C MSE 319 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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