PDBsum entry 1so0

Tunnel analysis for: 1so0 calculated with

MOLE 2.0

PDB id

1so0

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

1.52

16.4

-1.33

-0.41

26.7

83

3

2

1

1

1

0

0

2

1.21

1.56

17.5

-1.30

-0.35

27.0

85

3

2

1

2

1

0

0

3

1.24

2.10

16.4

-1.19

0.26

11.3

72

2

1

1

2

2

1

0

4

1.46

2.23

20.7

-1.78

-0.17

15.0

77

2

1

2

2

3

0

0

5

1.46

2.21

37.0

-1.74

-0.10

18.6

71

3

2

1

2

4

1

0

GAL 500 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.