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PDBsum entry 1smy

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Top Page protein ligands metals Protein-protein interface(s) links
Protein chain C    -    representing identical chain: M PDB id
1smy
Protein chain C highlighted
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Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
18 sheets
12 beta hairpins
3 psi loops
12 beta bulges
45 strands
31 helices
47 helix-helix interacs
132 beta turns
28 gamma turns
PROSITE
RNA_POL_BETA
Chains 229 a.a.
Chains 1119 a.a.
Chains 1392 a.a.
Chains 95 a.a.
Chains 345 a.a.
  
Chain & (1119 residues)

UniProt code: Q8RQE9 (RPOB_THET8)   [Pfam]

structural classification (6 domains) :
Domain Links CATH no.   Class Architecture
1 2.40.270.10 = Mainly Beta Beta Barrel
2 3.90.1100.10 = Alpha Beta Alpha-Beta Complex
3 3.90.1110.10 = Alpha Beta Alpha-Beta Complex
4 2.30.150.10 = Mainly Beta Roll
5 2.40.50.100 = Mainly Beta Beta Barrel
6 2.40.50.150 = Mainly Beta Beta Barrel

 

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


Domain 3
Topology diagram


Hera


Domain 4
Topology diagram


Hera


Domain 5
Topology diagram


Hera


Domain 6
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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