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PDBsum entry 1smd

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Tunnel analysis for: 1smd calculated with MOLE 2.0 PDB id
1smd
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.68 9.5 -2.47 -0.76 29.7 85 3 2 1 0 0 1 0  
2 2.47 6.9 -0.71 -0.25 12.4 75 1 0 0 1 1 1 0  1 PCA A
3 2.45 11.4 -0.28 -0.18 15.4 77 2 1 0 2 0 0 0  1 PCA A
4 2.23 8.7 -0.84 -0.18 16.6 69 1 1 0 1 2 1 0  
5 2.19 13.3 -1.25 -0.30 19.2 71 2 1 0 1 2 0 0  
6 1.56 12.1 -1.12 -0.66 15.6 87 1 2 2 1 1 0 0  
7 1.93 6.1 -0.59 -0.27 9.1 74 0 1 1 1 1 1 0  
8 1.56 10.4 -0.69 -0.38 9.6 85 1 1 2 3 0 0 0  
9 1.40 10.1 -1.46 -0.49 26.4 67 1 3 0 1 1 0 1  
10 1.77 6.9 -2.43 -0.67 21.3 80 2 1 1 0 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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