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PDBsum entry 1sl0

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1sl0 calculated with MOLE 2.0 PDB id
1sl0
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.88 1.87 28.7 -0.90 -0.51 10.6 87 3 1 1 2 1 0 0  DC 20 P DA 6 T
2 1.16 1.17 34.3 -1.10 -0.32 19.4 81 3 4 4 5 0 2 0  
3 1.17 1.17 42.6 -1.61 -0.41 21.5 82 5 5 4 4 1 1 0  
4 1.89 1.88 71.7 -0.73 -0.41 12.8 81 6 0 1 5 1 1 0  DG 12 P DC 13 P DT 17 P DA 6 T DG 7 T DG 8 T DC 9
T DA 10 T
5 1.59 1.71 76.5 -0.15 -0.16 11.1 76 6 0 1 7 1 1 0  DG 12 Q DT 17 Q DA 6 U DG 7 U DG 8 U DC 9 U DA 10
U
6 2.18 2.20 88.9 -1.49 -0.27 24.8 75 9 10 2 6 3 2 0  
7 2.08 2.08 92.0 -0.79 -0.34 12.9 71 5 3 2 5 3 1 0  DG 12 P DC 13 P DT 17 P DC 20 P DA 6 T DG 7 T DG
8 T DC 9 T DA 10 T
8 1.18 1.52 96.3 -0.88 -0.21 16.8 76 8 1 2 10 2 2 0  DG 12 P DC 13 P DT 17 P DA 6 T DG 7 T DG 8 T DC 9
T DA 10 T
9 1.85 1.90 128.4 -1.02 -0.32 17.6 82 11 6 4 9 4 2 0  DA 6 T DG 7 T DG 8 T DC 9 T
10 1.78 1.87 29.8 -0.80 -0.51 15.5 80 1 2 0 3 0 1 0  DA 15 Q DG 16 Q DT 17 Q DG 18 Q DC 19 Q DT 12 U
DG 14 U DC 15 U
11 1.96 1.97 28.8 -0.58 -0.45 13.7 83 1 2 1 3 0 0 0  DA 15 P DG 16 P DT 17 P DG 18 P DC 19 P DT 12 T
DG 13 T DG 14 T DC 15 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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