PDBsum entry 1sj3 Go to PDB code:  Tunnel analysis for: 1sj3 calculated with MOLE 2.0 PDB id 1sj3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.22 16.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 R U 120 R C 122 R U 123 R C 124 R A 142 R U 163 R MG 201 R 2 1.58 1.58 21.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 R C 121 R C 122 R C 136 R U 137 R G 138 R G 161 R G 162 R U 163 R G 164 R 3 1.58 1.58 22.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 100 R G 101 R G 102 R C 103 R C 104 R C 121 R C 122 R G 131 R C 132 R C 133 R G 134 R U 163 R G 164 R 4 1.57 1.57 28.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 R C 121 R C 122 R G 134 R G 135 R C 136 R U 137 R G 138 R G 162 R U 163 R G 164 R 5 1.14 1.40 31.4 -0.44 -0.32 13.3 70 3 1 0 3 1 0 0  C 146 R C 147 R A 148 R U 149 R 6 1.16 1.39 34.5 -0.63 -0.34 14.7 70 3 1 0 3 1 0 0  A 142 R A 143 R C 156 R C 157 R MG 202 R 7 1.17 1.40 40.8 -0.58 -0.48 11.5 70 2 1 0 3 1 0 0  G 140 R C 141 R A 142 R A 143 R C 156 R C 157 R G 158 R G 159 R MG 202 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.