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PDBsum entry 1sgf

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1sgf calculated with MOLE 2.0 PDB id
1sgf
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.16 4.16 25.7 -1.35 -0.47 11.4 81 2 2 3 0 3 0 0  
2 1.17 1.39 33.8 -1.19 -0.02 15.6 61 3 1 2 0 8 1 0  
3 1.69 1.89 49.8 -0.99 -0.50 10.2 81 3 2 3 1 3 1 0  
4 2.44 3.50 78.8 -2.19 -0.58 23.4 81 7 9 4 0 3 1 0  
5 1.70 1.91 82.8 -1.91 -0.47 26.7 82 11 9 6 4 3 1 0  
6 1.97 2.13 94.9 -1.54 -0.46 13.3 81 3 5 4 3 4 1 0  NAG 2 D
7 2.07 3.31 104.3 -2.11 -0.48 25.8 80 12 11 6 4 3 3 0  
8 2.55 3.14 134.7 -2.14 -0.52 26.1 81 15 16 9 3 6 1 0  
9 1.76 1.87 134.6 -2.13 -0.51 26.1 81 12 11 6 3 4 4 0  
10 1.76 1.87 135.4 -1.57 -0.55 18.1 80 6 8 3 2 4 4 0  
11 1.97 2.13 150.7 -1.89 -0.47 22.5 81 11 12 9 6 7 1 0  NAG 2 D
12 1.54 1.94 27.5 -1.66 -0.27 21.6 71 6 2 0 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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