PDBsum entry 1sgf

Tunnel analysis for: 1sgf calculated with

MOLE 2.0

PDB id

1sgf

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.41

30.4

-0.26

-0.10

9.8

72

2

0

1

2

4

2

0

2

1.29

1.43

30.7

-0.37

-0.07

12.8

74

2

1

1

3

4

1

0

3

1.29

1.41

36.8

-0.23

-0.05

12.4

74

3

1

1

4

5

1

0

4

1.17

1.39

37.5

-0.06

-0.06

9.9

72

3

0

1

3

5

2

0

5

1.13

1.16

23.1

-1.30

-0.40

9.6

70

2

1

1

2

2

1

0

6

1.14

1.31

27.0

-1.03

-0.15

14.1

71

5

1

3

3

2

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.