PDBsum entry 1s5j Go to PDB code:  Pore analysis for: 1s5j calculated with MOLE 2.0 PDB id 1s5j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.85 2.06 136.0 -1.45 -0.24 23.6 81 6 4 2 6 1 2 0   2 1.23 1.39 25.6 0.52 0.27 8.3 80 1 1 2 3 3 1 0   3 1.42 1.42 30.2 -0.23 -0.35 10.5 72 2 2 1 3 2 0 0   4 1.18 2.05 84.5 -0.15 0.15 15.9 79 7 3 4 11 5 1 0   5 1.57 1.61 92.8 0.22 0.03 12.7 81 3 5 2 13 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.