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PDBsum entry 1s32
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1s32 calculated with MOLE 2.0 PDB id
1s32
Pores calculated on whole structure Pores calculated excluding ligands
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24 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.65 3.79 34.0 -1.85 -0.65 22.9 85 3 1 2 1 0 0 0  DA 7 I DG 18 I DT 92 I DG 205 J DC 206 J DG 280 J
DG 281 J
2 2.94 3.00 37.5 -1.77 -0.60 18.4 90 6 0 5 1 1 0 0  DG 18 I DA 102 I DA 187 J DA 188 J DT 191 J DC
195 J
3 1.46 1.46 38.9 -1.33 -0.58 14.5 77 2 0 0 1 1 0 0  DG 15 I DC 16 I DA 17 I DG 18 I DA 19 I DT 20 I
DT 21 I DT 93 I DG 204 J DG 267 J DT 276 J DG 277
J DA 279 J DG 280 J DG 281 J
4 3.30 3.33 47.9 -1.84 -0.68 21.5 82 7 1 1 0 0 0 0  DA 29 I DT 37 I DA 102 I DG 103 I DT 104 I DA 113
I DC 114 I ABU 1605 I PYB 1624 I ABU 1625 I DT
182 J DT 183 J DT 184 J DG 185 J DG 186 J DA 187
J DA 188 J DA 189 J DT 191 J DA 259 J OGG 1700 J
5 2.80 2.96 49.2 -1.43 -0.51 17.3 81 6 1 0 1 1 0 0  DA 30 I DG 31 I DT 32 I DT 37 I DA 113 I DC 114 I
DA 115 I ABU 1605 I PYB 1624 I ABU 1625 I DT 182
J DT 183 J DT 184 J DG 185 J DA 256 J DA 257 J DT
258 J DA 259 J DC 260 J OGG 1700 J
6 2.80 2.96 58.8 -2.15 -0.42 26.2 83 10 0 1 1 1 0 0  DA 29 I DA 30 I DG 31 I DT 32 I DA 102 I DG 103 I
DT 104 I DG 185 J DG 186 J DA 187 J DA 188 J DA
189 J DT 191 J DA 256 J DA 257 J DT 258 J DA 259
J DC 260 J
7 1.51 1.51 58.6 -1.54 -0.65 18.2 80 5 0 0 0 0 0 0  DA 1 I DA 4 I DA 5 I DG 214 J DC 215 J DG 216 J D
A 291 J DT 292 J
8 1.48 1.48 58.9 -1.30 -0.51 16.2 90 4 0 3 3 1 0 0  DA 17 I DG 18 I DA 19 I DT 20 I DT 21 I DT 92 I
DC 195 J DG 267 J DT 276 J DG 277 J DA 279 J DG
280 J
9 3.19 3.18 61.0 -1.52 -0.63 17.0 88 9 2 5 1 1 0 0  DG 18 I DA 29 I DT 37 I DA 102 I DA 113 I DC 114
I ABU 1605 I PYB 1624 I ABU 1625 I DT 182 J DT
183 J DT 184 J DG 185 J DC 195 J DA 259 J OGG
1700 J
10 1.50 1.50 67.9 -1.52 -0.50 18.5 86 5 0 2 2 1 0 0  DA 7 I DT 8 I DC 10 I DA 17 I DG 18 I DA 19 I DT
20 I DT 21 I DG 205 J DC 206 J DG 267 J DT 276 J
DG 277 J DA 279 J DG 280 J DG 281 J DT 282 J
11 2.80 2.96 71.9 -1.84 -0.45 21.4 87 12 1 5 2 2 0 0  DG 18 I DA 29 I DA 30 I DG 31 I DT 32 I DA 102 I
DG 185 J DC 195 J DA 256 J DA 257 J DT 258 J DA
259 J DC 260 J
12 3.19 3.30 73.7 -1.24 -0.50 16.2 89 7 1 6 4 2 0 0  DT 37 I DT 38 I DG 39 I DG 40 I DC 49 I DA 113 I
DC 114 I DA 115 I DT 123 I DA 124 I DT 166 J DT
167 J DT 169 J DA 174 J DA 175 J DT 182 J DA 248
J DG 249 J DT 250 J DA 259 J
13 1.38 1.41 80.2 -1.57 -0.64 18.5 83 8 1 2 1 1 0 0  DT 37 I DT 38 I DG 39 I DG 40 I DT 48 I DC 49 I
DC 50 I DT 52 I DC 53 I DA 113 I DC 114 I DA 115
I DA 174 J DA 175 J DT 182 J DG 243 J DG 244 J DA
245 J DC 247 J DA 248 J DG 249 J DT 250 J DA 259 J
14 2.52 3.62 80.7 -2.09 -0.52 25.5 77 17 3 3 3 3 2 0  DA 29 I DT 37 I DA 72 I DA 113 I DC 114 I ABU
1605 I PYB 1624 I ABU 1625 I DT 182 J DT 183 J DT
184 J DG 185 J DG 216 J DA 259 J OGG 1700 J
15 2.42 2.81 81.3 -1.84 -0.38 23.2 81 15 1 6 9 4 3 0  DC 49 I DA 72 I DT 123 I DA 124 I DT 166 J DT 167
J DT 169 J DG 216 J DA 248 J
16 1.81 2.19 86.1 -1.98 -0.50 18.8 84 6 2 6 3 0 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DA 72 I DG 205 J DC
206 J DA 279 J DG 280 J DG 281 J DT 282 J MN 2005
J
17 1.43 1.45 87.7 -2.11 -0.47 25.4 77 16 1 2 5 3 3 0  DT 48 I DC 49 I DC 50 I DT 52 I DC 53 I DA 72 I
DG 216 J DG 243 J DG 244 J DA 245 J DC 247 J DA
248 J DG 249 J
18 2.39 2.39 87.6 -1.33 -0.61 15.2 88 8 1 8 2 1 0 0  DT 37 I DT 38 I DG 39 I DG 40 I DC 49 I DC 50 I
DT 52 I DC 53 I DA 113 I DC 114 I DA 115 I DG 164
J DA 174 J DA 175 J DT 182 J DT 237 J DT 238 J DT
239 J DG 240 J DA 241 J DT 242 J DA 248 J DG 249
J DT 250 J DA 259 J
19 2.35 3.72 91.6 -2.29 -0.41 28.2 78 20 2 3 6 4 2 0  DA 29 I DA 30 I DG 31 I DT 32 I DA 72 I DG 185 J
DG 216 J DA 256 J DA 257 J DT 258 J DA 259 J DC
260 J
20 2.34 2.34 95.2 -1.88 -0.48 21.9 81 16 1 8 5 3 3 0  DC 49 I DC 50 I DT 52 I DC 53 I DA 72 I DG 164 J
DG 216 J DT 237 J DT 238 J DT 239 J DG 240 J DA
241 J DT 242 J DA 248 J
21 2.51 2.82 97.7 -1.67 -0.22 21.4 82 13 3 10 7 8 2 0  DG 18 I DC 49 I DA 102 I DT 123 I DA 124 I DT 166
J DT 167 J DT 169 J DC 195 J DA 248 J
22 3.17 3.60 98.1 -1.51 -0.67 17.0 89 10 2 7 1 1 0 0  DT 37 I DT 38 I DG 39 I DG 40 I DC 49 I DG 59 I D
A 113 I DC 114 I DA 115 I DG 134 I DG 135 I DA
153 J DG 164 J DA 174 J DA 175 J DT 182 J DT 239
J DG 240 J DA 248 J DG 249 J DT 250 J DA 259 J
23 1.81 2.18 99.9 -1.78 -0.55 16.4 88 7 3 10 4 0 1 0  DC 9 I DC 10 I DG 18 I DA 72 I DT 92 I DC 195 J D
A 279 J DG 280 J MN 2005 J
24 2.71 2.85 100.3 -2.26 -0.41 26.1 81 16 3 8 9 4 2 0  DA 72 I DA 102 I DA 187 J DA 188 J DT 191 J
25 1.44 1.45 104.1 -1.80 -0.29 22.1 79 14 3 6 4 7 2 0  DG 18 I DT 48 I DC 49 I DC 50 I DT 52 I DC 53 I D
A 102 I DC 195 J DG 243 J DG 244 J DA 245 J DC
247 J DA 248 J DG 249 J
26 1.60 1.60 105.0 -2.01 -0.57 22.8 76 10 0 1 1 0 1 0  DA 4 I DA 5 I DA 7 I DT 8 I DC 9 I DC 10 I DG 214
J DC 215 J DA 279 J DG 280 J DG 281 J DT 282 J DT
288 J DT 289 J DG 290 J DA 291 J DT 292 J MN 2005
J
27 1.54 1.54 110.0 -1.40 -0.42 15.3 83 9 2 7 4 1 1 0  DC 9 I DC 10 I DA 17 I DG 18 I DA 19 I DT 20 I DT
21 I DA 72 I DG 267 J DT 276 J DG 277 J DA 279 J
28 1.33 2.15 114.5 -2.47 -0.41 31.5 79 16 7 6 9 3 3 0  DG 18 I DA 102 I DC 195 J
29 1.23 2.18 130.4 -2.32 -0.50 29.9 78 19 8 3 8 3 3 0  DA 29 I DT 37 I DA 113 I DC 114 I DA 115 I ABU
1605 I PYB 1624 I ABU 1625 I DT 182 J DT 183 J DT
184 J DG 185 J DA 259 J OGG 1700 J
30 1.82 2.17 136.8 -1.70 -0.63 16.8 86 17 3 11 4 1 2 0  DA 41 I DC 49 I DA 133 I DG 134 I DT 142 I DT 143
I DG 144 I MN 2004 I DT 154 J DC 155 J DC 156 J
DC 158 J DG 164 J DA 248 J DA 256 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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