PDBsum entry 1s1m

Tunnel analysis for: 1s1m calculated with

MOLE 2.0

PDB id

1s1m

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.31

2.27

25.4

-0.06

0.09

10.1

72

2

1

1

3

4

2

0

2

1.29

3.20

26.1

-0.02

0.12

9.4

71

2

1

1

4

4

2

0

3

1.61

1.64

17.4

-0.21

0.22

11.9

75

2

1

0

3

1

0

0

IOD 809 B

4

1.35

2.69

17.8

-1.86

-0.45

20.1

78

4

2

1

0

2

1

0

5

1.24

1.33

17.4

-1.54

-0.62

19.8

87

3

2

1

1

1

0

0

6

1.28

1.34

15.1

-1.36

-0.30

20.9

80

2

1

1

1

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.