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PDBsum entry 1s0v

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Top Page protein dna_rna ligands metals Protein-protein interface(s) links
Protein chain A    -    representing identical chains: B C D PDB id
1s0v
Protein chain A highlighted
(click to view)
 
Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
8 sheets
8 beta hairpins
5 beta bulges
18 strands
40 helices
59 helix-helix interacs
69 beta turns
15 gamma turns
Catalytic residues
K631
  
Chain & (857 residues)

UniProt code: P00573 (RPOL_BPT7)   [Pfam]

structural classification (5 domains) :
Domain Links CATH no.   Class Architecture
1 1.10.1320.10 = Mainly Alpha Orthogonal Bundle
2 1.10.287.260 = Mainly Alpha Orthogonal Bundle
3 3.30.70.370 = Alpha Beta 2-Layer Sandwich
4 1.10.287.280 = Mainly Alpha Orthogonal Bundle
5 1.10.150.20 = Mainly Alpha Orthogonal Bundle

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
CSA annotation:   
    catalytic residue
Residue contacts:   
    to ligand     to DNA/RNA     to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9  BC1
 BC2  BC3

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


Domain 3
Topology diagram


Hera


Domain 4
Topology diagram


Hera


Domain 5
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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