PDBsum entry 1rzt

Tunnel analysis for: 1rzt calculated with

MOLE 2.0

PDB id

1rzt

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.37

35.6

0.06

-0.15

9.7

78

3

1

2

5

2

0

1

DA 5 B DA 6 B

2

1.20

1.63

45.5

0.49

-0.06

6.6

80

3

1

3

6

2

0

1

DG 3 B DA 5 B DA 6 B DC 7 B

3

1.21

1.47

48.5

0.39

-0.03

7.1

81

3

2

5

6

2

2

1

DA 5 B DA 6 B DC 7 B DG 8 N DC 9 N DA 10 N DC 11 N

4

1.20

1.62

55.5

0.19

-0.05

6.3

77

3

1

3

6

3

1

1

DA 5 B DA 6 B DC 7 B DC 7 N DG 8 N DC 9 N DT 2 O
DG 3 O

5

1.21

1.47

58.0

-0.32

-0.26

9.1

80

5

1

4

5

2

1

1

DA 5 B DA 6 B DC 7 B DG 3 N DA 6 N DC 7 N DG 8 N

6

1.20

1.47

62.1

0.21

-0.22

4.7

83

3

1

4

6

2

1

1

DA 5 B DA 6 B DC 7 B DG 2 N DG 3 N DA 6 N DC 7 N

7

1.21

1.44

63.2

-0.25

-0.12

9.7

74

2

2

4

6

3

0

1

DA 5 B DA 6 B DC 7 B DG 8 B DA 10 B DC 11 B DG 1
C DG 3 C DC 4 C DG 5 C

8

1.20

1.39

65.2

0.10

-0.15

6.7

83

4

1

7

6

2

3

1

DA 5 B DA 6 B DC 7 B DG 8 B DC 9 B DC 11 B DC 7 N
DG 8 N

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.