spacer
spacer

Ligand clusters for UniProt code Q9UGP5

Ligand clusters for Q9UGP5: DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1

Top 6 (of 21) ligand clusters
Cluster 1.
18 ligand types
75 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4k4iA  
 

Structures

PDB   Schematic diagram
4k4iA    
2bcvA    
3uq2A    
2bcrA    
2bcuA    
 more ...

 

 Cluster 1 contains 18 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description

_Mg
 
1. Metal: _MG × 23
PDB codes: 1xsn(A), 2bcq(A), 2bcr(A), 2bcs(A), 2bcv(A), 2pfn(A), 2pfo(A), 2pfp(A), 2pfq(A), 3c5g(A), 3hw8(A), 3hwt(A), 3hx0(A), 3mda(A), 3mdc(A), 3mgi(A), 3pml(A), 3pmn(A), 3pnc(A), 3uq2(A), 4fo6(A).

_Na
 
2. Metal: _NA × 9
PDB codes: 1xsp(A), 2bcu(A), 2bcv(A), 2pfn(A), 2pfp(A), 2pfq(A), 3c5g(A), 3hw8(A), 3pnc(A).


 
3. Ligand: PPV × 8
Pyrophosphate
PDB codes: 1xsp(A), 2bcq(A), 2bcr(A), 2bcs(A), 2bcu(A), 2pfq(A), 3mda(A), 3uq2(A).

_Mn
 
4. Metal: _MN × 7
PDB codes: 2pfo(A), 2pfq(A), 3pmn(A), 3upq(A), 4fo6(A).


 
5. Ligand: D3T × 6
2',3'-Dideoxy-Thymidine-5'-Triphosphate
PDB codes: 1xsn(A), 3c5g(A), 3hw8(A), 3hwt(A), 3hx0(A), 3mgi(A).

_Ca
 
6. Metal: _CA × 6
PDB codes: 4k4g(A), 4k4h(A), 4k4i(A),


 
7. Ligand: 1GC × 3
2'-Deoxy-5'-O-[(R)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]guanosine
PDB codes: 3pml(A), 3pmn(A), 3pnc(A).


 
8. Ligand: DCP × 2
2'-Deoxycytidine-5'-Triphosphate
PDB codes: 2pfp(A), 2pfq(A).


 
9. Ligand: DUP × 2
2'-Deoxyuridine 5'-Alpha,Beta-Imido-Triphosphate
PDB codes: 2pfn(A), 2pfo(A).


 
10. Ligand: 1RY × 1
[[(2r,5s)-5-(4-Azanyl-5-Fluoranyl-2-Oxidanylidene- Pyrimidin-1-Yl)-1,3-Oxathiolan-2-Yl]methoxy-
Oxidanyl- Phosphoryl] phosphono hydrogen phosphate
PDB code: 4k4i(A).


 
11. Ligand: 1RZ × 1
[[(2r,5s)-5-(4-Azanyl-2-Oxidanylidene-Pyrimidin-1-Yl)- 1,3-Oxathiolan-2-Yl]methoxy-Oxidanyl-
Phosphoryl] phosphono hydrogen phosphate
PDB code: 4k4h(A).


 
12. Ligand: 1S0 × 1
4-Amino-1-{2-Deoxy-5-O-[(R)-Hydroxy{[(s)- Hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-Beta- L-
Erythro-Pentofuranosyl}pyrimidin-2(1h)-One
PDB code: 4k4g(A).


 
13. Ligand: F2A × 1
2'-Deoxy-5'-O-[(S)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]adenosine
PDB code: 4fo6(A).


 
14. Ligand: GTF × 1
2'-Deoxy-2',2'-Difluorocytidine 5'-(Tetrahydrogen triphosphate)
PDB code: 3mdc(A).


 
15. Ligand: SO4 × 1
Sulfate ion
PDB code: 3uq0(A).


 
16. Ligand: TRS × 1
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 3pnc(A).


 
17. Ligand: TTP × 1
Thymidine-5'-Triphosphate
PDB code: 2bcv(A).


 
18. Ligand: ZAN × 1
5'-O-[(S)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]adenosine
PDB code: 3upq(A).

 

 Cluster 2 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACT × 2
acetic acid
Acetate ion
PDB codes: 4k4h(A), 4k4i(A).


 
2. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2bcr(A).

_Cl
 
3. Metal: _CL × 1
PDB code: 2gws(A).

 

 Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 2bcq(A), 2bcr(A).

_Mn
 
2. Metal: _MN × 1
PDB code: 3pmn(A).

 

 Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 3upq(A), 3uq0(A).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 3upq(A), 3uq0(A).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3upq(A).

 

spacer

spacer