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PDBsum entry 1rzi

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1rzi calculated with MOLE 2.0 PDB id
1rzi
Pores calculated on whole structure Pores calculated excluding ligands

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31 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.42 2.76 39.5 -0.78 -0.53 4.3 84 1 1 6 3 0 4 0  
2 2.03 3.50 45.1 -2.34 -0.60 24.1 77 3 3 4 0 1 4 0  
3 1.84 1.97 54.6 -2.05 -0.68 16.5 87 5 5 8 0 1 3 0  
4 2.83 5.36 54.6 -1.35 -0.43 14.1 78 4 3 4 1 4 0 0  
5 1.97 3.18 66.1 -2.10 -0.59 22.3 82 5 4 4 1 1 3 0  
6 1.96 3.18 67.4 -1.97 -0.53 18.3 80 5 5 5 1 1 5 0  
7 2.17 2.20 68.7 -1.62 -0.59 13.4 82 4 3 6 1 0 4 0  
8 3.38 3.39 71.8 -1.63 -0.49 14.9 76 5 2 5 2 0 4 0  
9 2.85 3.06 73.1 -0.19 -0.47 3.7 96 2 1 12 3 3 0 0  
10 2.17 2.20 74.0 -1.50 -0.68 14.1 87 5 4 5 1 1 2 0  
11 1.85 1.97 76.9 -1.44 -0.63 10.7 90 5 2 9 3 0 2 0  
12 2.63 2.63 79.8 -1.54 -0.55 12.0 81 5 4 7 2 1 5 0  
13 2.03 2.81 84.0 -1.87 -0.52 22.3 77 6 4 3 2 1 5 0  
14 1.50 2.37 89.9 -1.86 -0.65 14.9 85 4 6 8 1 1 5 0  
15 1.84 1.97 88.8 -1.89 -0.65 12.9 86 6 5 10 2 0 4 0  
16 1.97 3.18 91.5 -1.56 -0.62 14.2 81 6 5 9 3 1 6 0  
17 1.85 1.97 95.5 -1.39 -0.69 9.8 87 7 3 12 4 0 4 0  
18 1.33 1.33 94.8 -2.01 -0.69 18.7 91 6 7 12 2 1 3 0  
19 1.83 2.21 99.5 -2.13 -0.68 18.8 86 8 6 10 2 0 5 0  
20 3.20 3.19 99.0 -1.79 -0.55 14.3 80 6 4 6 3 0 6 0  
21 1.50 1.50 104.1 -1.91 -0.75 12.8 94 7 5 16 2 0 2 0  
22 2.74 3.11 104.4 -1.07 -0.69 7.2 96 4 3 17 4 1 3 0  
23 1.42 1.41 107.6 -1.67 -0.67 15.5 93 6 4 11 3 0 2 0  
24 1.28 1.26 114.3 -1.88 -0.67 14.6 90 8 5 12 3 0 4 0  
25 1.70 1.88 119.4 -2.05 -0.72 16.1 89 10 6 15 2 0 5 0  
26 1.75 2.03 132.5 -1.97 -0.65 17.1 86 11 6 12 3 0 7 0  
27 2.21 2.20 135.0 -1.48 -0.59 14.0 81 10 6 10 6 0 7 0  
28 1.57 1.91 143.4 -1.19 -0.74 9.3 99 6 4 22 6 1 0 0  
29 1.63 1.78 150.5 -1.24 -0.63 11.9 94 7 5 17 6 0 5 0  
30 1.18 1.24 196.2 -0.84 -0.33 9.8 85 9 6 22 12 8 6 0  
31 1.34 1.37 30.0 -0.69 -0.31 9.5 83 2 2 4 2 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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