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PDBsum entry 1rv2
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1rv2 calculated with MOLE 2.0 PDB id
1rv2
Pores calculated on whole structure Pores calculated excluding ligands
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40 pores, coloured by radius 49 pores, coloured by radius 49 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.93 1.99 39.6 -0.73 -0.24 12.7 77 3 3 2 1 4 0 1  MSE 461 A MSE 462 A
2 1.25 1.36 42.0 -0.99 -0.44 15.2 77 4 4 2 4 3 1 0  MSE 85 A DG 2 E DC 4 E DT 5 E DC 109 F DT 111 F
DG 16 K DC 17 K DG 18 K DG 101 L DC 102 L DG 103 L
3 1.40 1.89 54.1 -0.05 0.15 6.7 83 2 2 4 9 3 1 0  
4 1.54 1.61 59.4 -1.28 -0.24 20.8 81 6 4 1 6 4 0 0  MSE 541 B
5 1.16 1.15 62.4 -0.85 -0.69 9.1 89 4 1 4 1 0 2 0  DG 9 I DA 10 I DC 11 I DA 12 I DG 13 I DC 14 I DC
15 I DG 16 I DC 17 I DC 105 J DT 106 J DG 107 J
DT 108 J
6 1.58 1.58 67.4 -0.69 -0.06 19.6 83 7 5 1 7 4 0 0  MSE 541 B
7 2.14 2.13 82.3 -0.98 -0.10 13.3 85 6 1 5 4 3 0 0  MSE 256 A MSE 489 A MSE 553 A DC 4 E DT 5 E DT
111 F DG 114 F DA 115 F DG 103 L
8 1.41 1.48 96.3 -1.38 -0.59 13.9 85 7 2 5 1 2 0 0  MSE 256 A MSE 728 A DC 4 E DT 5 E DT 8 E DG 9 E D
A 10 E DC 11 E DA 12 E DC 102 F DG 103 F DC 109 F
DT 111 F DA 112 F DA 113 F DG 114 F
9 3.22 3.22 108.6 -1.89 -0.55 21.4 85 8 7 8 4 1 0 0  MSE 256 C DC 1 I DG 2 I DC 4 I DT 5 I DT 111 J DA
112 J DA 113 J DG 114 J DA 115 J
10 1.38 1.95 118.1 -1.03 -0.14 17.3 80 10 10 9 7 9 1 0  MSE 85 B MSE 553 B DT 6 G
11 1.24 2.76 128.9 -0.75 -0.16 19.5 80 9 9 4 9 5 0 1  MSE 489 B MSE 553 B MSE 659 B MSE 683 B
12 1.37 1.41 128.9 -1.20 -0.38 16.1 83 12 4 4 5 4 0 0  MSE 489 A MSE 553 A MSE 728 A DT 8 E DG 9 E DA 10
E DC 11 E DA 12 E DC 102 F DG 103 F DT 111 F DA
112 F DA 113 F DG 114 F DG 103 L
13 1.30 2.14 144.6 -0.25 0.07 12.5 78 6 6 7 12 10 2 0  MSE 553 B MSE 866 B DA 115 H
14 1.25 2.09 147.0 -0.14 0.00 12.5 82 5 8 11 13 10 1 0  MSE 85 B MSE 866 B DT 6 G DA 112 H DA 113 H DG
114 H
15 1.54 3.99 155.3 -1.40 -0.36 24.5 81 14 16 9 8 5 0 0  MSE 553 B
16 1.52 2.29 170.7 -1.44 -0.48 20.6 79 16 14 7 9 6 1 0  MSE 85 B MSE 900 B DT 6 G DA 7 G DT 8 G DG 9 G DA
10 G DG 103 H DG 104 H
17 1.26 2.70 170.0 -1.10 -0.21 19.9 78 16 13 6 11 11 1 1  MSE 85 B MSE 659 B MSE 683 B DT 6 G
18 1.47 2.35 180.3 -1.16 -0.25 20.2 80 12 16 10 17 9 3 0  MSE 866 B DA 115 H
19 1.56 1.62 183.2 -1.83 -0.53 22.6 79 17 9 9 3 4 0 1  MSE 256 C DC 1 I DG 2 I DC 4 I DT 5 I DT 111 J DA
112 J DA 113 J DG 114 J DA 115 J
20 1.50 4.01 198.1 -1.52 -0.31 20.9 80 14 11 11 6 7 0 0  MSE 553 B MSE 256 C DC 1 I DG 2 I DC 4 I DT 5 I
DT 111 J DA 112 J DA 113 J DG 114 J DA 115 J
21 1.26 2.06 223.1 -1.20 -0.21 17.7 79 12 11 11 15 11 3 0  MSE 866 B MSE 256 C DA 115 H DC 1 I DG 2 I DC 4 I
DT 5 I DT 111 J DA 112 J DA 113 J DG 114 J DA 115
J
22 1.22 1.43 248.9 -0.78 -0.27 14.3 80 13 7 12 17 9 2 0  MSE 900 B MSE 256 C DT 6 G DA 7 G DT 8 G DG 9 G D
A 10 G DG 103 H DG 104 H DC 1 I DG 2 I DC 4 I DT
5 I DT 111 J DA 112 J DA 113 J DG 114 J DA 115 J
23 1.40 2.00 35.1 0.03 0.04 14.0 76 3 2 1 4 2 0 0  MSE 681 D MSE 683 D
24 1.51 2.15 40.3 -0.25 -0.05 13.5 77 3 3 1 7 3 1 0  
25 1.51 2.20 62.5 -0.94 -0.14 12.3 77 1 4 2 4 4 1 0  MSE 489 D MSE 553 D
26 1.37 1.37 68.9 0.67 0.23 8.9 79 4 3 3 11 4 0 0  
27 1.35 1.75 70.7 -0.04 0.01 13.8 81 4 7 5 8 4 0 0  MSE 683 D
28 1.57 2.73 70.8 -1.24 -0.28 17.5 81 5 6 5 5 3 1 0  MSE 347 D MSE 489 D MSE 553 D
29 1.33 1.69 72.7 -0.15 -0.03 13.9 81 4 6 6 9 3 0 0  MSE 681 D
30 1.55 2.20 82.7 -1.09 -0.26 12.9 79 4 3 4 5 5 2 0  MSE 347 D
31 1.35 1.69 97.0 0.22 0.08 9.2 81 3 3 4 11 5 1 0  MSE 683 D
32 1.35 1.46 95.8 -0.68 -0.23 13.0 87 4 5 5 6 2 2 0  DT 108 L
33 1.36 1.47 98.7 0.83 0.20 7.2 83 3 4 3 15 5 1 0  DT 108 L
34 1.40 1.74 101.1 -0.17 -0.03 12.6 81 7 5 6 12 5 1 0  MSE 347 D MSE 683 D
35 1.26 1.68 109.3 -1.69 -0.50 20.8 80 9 9 8 3 5 0 0  MSE 489 D MSE 553 D
36 1.40 1.39 117.4 -0.29 0.02 14.6 78 8 6 7 15 9 0 0  MSE 489 D MSE 553 D
37 1.83 1.83 128.6 -1.72 -0.42 17.6 79 9 8 9 3 6 3 0  MSE 489 D MSE 553 D
38 1.34 1.46 132.1 -0.81 -0.17 16.2 83 8 9 9 10 6 1 0  MSE 489 D MSE 553 D
39 1.37 1.37 139.7 -0.70 -0.20 16.9 80 10 8 8 10 7 0 0  MSE 659 D MSE 683 D
40 1.45 1.46 142.1 -0.42 -0.04 11.3 77 7 4 7 15 11 1 0  MSE 728 D
41 1.34 1.46 148.8 -0.64 -0.26 14.4 85 8 8 7 11 4 2 0  
42 1.53 2.15 153.3 -1.78 -0.47 14.3 78 8 6 9 3 8 4 0  MSE 728 D
43 1.55 2.76 154.6 -1.57 -0.45 14.4 79 12 8 11 3 6 4 0  MSE 347 D MSE 728 D
44 1.38 1.38 156.2 -0.09 0.01 11.9 79 9 6 9 21 10 0 0  MSE 681 D MSE 683 D MSE 728 D
45 1.36 1.46 156.9 -0.93 -0.24 13.0 82 7 7 9 10 8 2 0  MSE 728 D
46 1.32 1.80 167.4 -1.21 -0.33 14.5 79 10 8 11 9 7 3 0  MSE 681 D MSE 728 D
47 1.43 1.43 169.5 -1.48 -0.48 13.6 84 12 6 16 3 5 2 0  MSE 347 D MSE 728 D DA 10 K DC 11 K DA 12 K DG 13
K
48 1.35 1.88 171.0 -0.48 -0.14 13.3 83 9 9 11 16 7 1 0  MSE 681 D MSE 728 D
49 1.35 1.35 199.0 -1.31 -0.47 17.3 83 9 11 9 8 6 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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