PDBsum entry 1rpy Go to PDB code:  Tunnel analysis for: 1rpy calculated with MOLE 2.0 PDB id 1rpy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.31 5.49 15.8 -0.54 -0.06 4.0 62 1 0 3 3 4 0 0   2 2.31 5.49 16.9 -0.62 -0.05 3.6 58 1 1 2 3 4 0 0   3 1.21 1.31 21.5 0.52 -0.13 3.9 67 1 1 1 3 4 0 0  MSE 482 A MSE 482 B 4 1.20 1.30 28.1 0.51 -0.03 5.8 67 2 0 1 3 4 0 0  MSE 482 A MSE 482 B 5 1.50 2.21 18.4 -1.46 -0.34 23.5 92 3 1 1 1 0 0 0  SO4 101 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.