PDBsum entry 1rid

Tunnel analysis for: 1rid calculated with

MOLE 2.0

PDB id

1rid

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

10 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.28

1.28

15.5

-0.88

-0.57

6.7

77

1

0

2

1

2

0

0

2

1.36

1.48

16.4

-0.23

0.09

5.4

73

1

1

2

1

2

1

2

3

1.40

2.49

16.6

-0.40

0.06

5.5

76

1

1

2

1

2

1

1

4

1.35

2.41

18.0

-0.11

0.33

5.3

78

0

1

1

3

2

1

0

5

1.23

1.46

15.0

0.07

-0.11

9.6

70

1

1

1

1

1

2

0

IDS 245 A SGN 246 A

6

1.20

2.34

15.4

1.22

0.38

8.1

68

1

1

1

2

1

2

2

IDS 245 A SGN 246 A

7

1.19

1.48

23.3

0.40

0.06

3.6

70

0

1

1

2

1

2

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.