 |
PDBsum entry 1rfn
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1rfn calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1rfn
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.18 |
1.65 |
15.9 |
-0.49 |
-0.04 |
20.2 |
87 |
|
2 |
1 |
1 |
4 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.18 |
1.78 |
16.2 |
-0.64 |
0.12 |
26.8 |
88 |
3 |
1 |
0 |
3 |
0 |
0 |
0 |
|
|
3 |
 |
1.21 |
1.21 |
31.1 |
-0.41 |
-0.47 |
8.8 |
73 |
2 |
1 |
2 |
5 |
4 |
0 |
1 |
PBZ 501 A
|
 |
4 |
 |
1.10 |
1.27 |
15.9 |
-0.95 |
-0.43 |
8.7 |
69 |
1 |
2 |
0 |
0 |
2 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program