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PDBsum entry 1rd5

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 1rd5 PDB id
1rd5
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 5561.58 1.35 70.04 2 10.46 3 14.58 1 10 9 16 35 11 19 2  
2 4118.34 0.00 69.43 3 12.58 2 12.01 3 7 6 13 25 6 11 0  
3 2119.50 0.00 73.65 1 14.71 1 13.46 2 10 6 0 17 4 2 0 MLA 302[A], MLA 301[B] (14 atoms)
4 1530.56 0.00 61.89 8 8.97 6 8.74 6 6 4 6 9 1 5 1  
5 1044.56 0.00 63.49 5 7.05 8 8.59 7 6 2 3 7 1 3 0  
6 583.45 0.00 63.71 4 10.03 4 7.67 8 3 3 1 3 1 0 0  
7 606.23 0.00 62.08 7 9.12 5 8.74 5 4 3 3 1 1 1 0  
8 437.48 0.00 62.73 6 7.11 7 7.26 9 3 3 2 3 0 1 0  
9 413.86 0.00 53.01 10 6.13 9 7.04 10 2 0 3 2 0 4 0  
10 467.86 0.00 54.89 9 4.89 10 10.32 4 2 3 2 3 1 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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