spacer
spacer

PDBsum entry 1r2y

Go to PDB code: 
Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 1r2y calculated with MOLE 2.0 PDB id
1r2y
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.20 8.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  3 DA B,4 DG B,5 DA B,6 DC B,22 DT C,23 DA C
2 2.22 9.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 DT B,3 DA B,4 DG B,22 DT C,23 DA C,24 DC C
3 1.68 3.2 -1.27 -0.60 3.2 77 0 0 1 0 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer