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PDBsum entry 1r0z

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1r0z calculated with MOLE 2.0 PDB id
1r0z
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.71 1.68 52.6 -0.10 -0.13 6.1 77 4 2 4 7 5 1 0  SEP 670 B MG 674 B ATP 675 B
2 1.70 1.69 54.7 -0.43 -0.13 8.6 76 6 2 4 5 6 1 0  SEP 670 B MG 674 B ATP 675 B
3 1.37 3.96 74.4 -0.65 0.09 19.1 80 8 2 7 12 3 0 0  SEP 670 B
4 2.09 3.53 33.2 -1.95 -0.23 24.2 78 6 3 3 3 2 0 0  
5 3.56 5.38 67.5 -2.39 -0.46 30.9 83 9 4 4 2 1 0 0  
6 3.01 3.02 27.0 -1.16 -0.34 14.2 71 1 1 3 3 2 0 0  ATP 675 A
7 1.22 1.41 33.7 1.08 0.24 5.9 74 0 2 3 7 1 0 1  ATP 675 A
8 1.22 1.41 36.5 -0.25 -0.13 10.0 76 2 2 3 5 1 0 1  ATP 675 A
9 1.30 1.62 27.5 1.30 0.36 4.5 73 0 1 2 6 2 0 0  MG 674 C ATP 675 C
10 3.03 3.03 27.9 -1.24 -0.23 14.2 72 2 1 3 3 2 0 0  MG 674 C ATP 675 C
11 1.32 1.63 30.0 -1.27 -0.44 18.3 83 3 4 2 4 0 0 0  SEP 660 C MG 674 C ATP 675 C
12 1.85 2.04 32.3 -1.42 -0.46 19.8 79 3 4 2 3 1 0 0  SEP 660 C MG 674 C ATP 675 C
13 1.28 3.72 25.4 2.29 0.86 6.0 82 1 2 1 8 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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