PDBsum entry 1qz2

Isomerase/chaperone

PDB id: 1qz2

Contents

Protein chain

285 a.a. *

Ligands

MET-GLU-GLU-VAL-ASP ×2

Waters ×221

* Residue conservation analysis

PDB id:

1qz2

Name:

Isomerase/chaperone

Title:

Crystal structure of fkbp52 c-terminal domain complex with thE C- terminal peptide meevd of hsp90

Structure:

Fk506-binding protein 4. Chain: a, b, c. Fragment: fkbp52 c-terminal domain. Synonym: fkbp52 protein, 52 kda fk506 binding protein, fkbp59. Engineered: yes. 5-mer peptide from heat shock protein hsp 90. Chain: g, h. Synonym: hsp90. Engineered: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: this sequence is occurs naturally in human

Biol. unit:

Pentamer (from PQS)

Resolution:

3.00Å R-factor: 0.230 R-free: 0.287

Authors:

B.Wu,P.Li,Z.Lou,Y.Liu,Y.Ding,C.Shu,B.Shen,Z.Rao

Key ref:

B.Wu et al. (2004). 3D structure of human FK506-binding protein 52: implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex. Proc Natl Acad Sci U S A, 101, 8348-8353. PubMed id: 15159550 DOI: 10.1073/pnas.0305969101

Date:

15-Sep-03 Release date: 22-Jun-04

Protein chains

Q02790  (FKBP4_HUMAN) -  Peptidyl-prolyl cis-trans isomerase FKBP4 from Homo sapiens

Seq: 459 a.a.

Struc: 285 a.a.*

* PDB and UniProt seqs differ at 4 residue positions (black crosses)

Enzyme reactions

• Enzyme class: E.C.5.2.1.8 - peptidylprolyl isomerase.
• Reaction: [protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

Added reference

DOI no: 10.1073/pnas.0305969101

Proc Natl Acad Sci U S A 101:8348-8353 (2004)

PubMed id: 15159550

3D structure of human FK506-binding protein 52: implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex.

B.Wu, P.Li, Y.Liu, Z.Lou, Y.Ding, C.Shu, S.Ye, M.Bartlam, B.Shen, Z.Rao.

ABSTRACT

FK506-binding protein 52 (FKBP52), which binds FK506 and possesses peptidylprolyl isomerase activity, is an important immunophilin involved in the heterocomplex of steroid receptors with heat-shock protein 90. Here we report of FKBP52 and the complex with a C-terminal pentapeptide from heat-shock protein 90. Based on the structures of these two overlapped fragments, the complete putative structure of FKBP52 can be defined. The structure of FKBP52 is composed of two consecutive FKBP domains, a tetratricopeptide repeat domain and a short helical domain beyond the final tetratricopeptide repeat motif. Key structural differences between FKBP52 and FKBP51, including the relative orientations of the four domains and some important residue substitutions, could account for the differential functions of FKBPs.

Selected figure(s)

Figure 2.
Fig. 2. Stereo view of the superposition of FK and TPR domains. (a) Two FKBP domains of FKBP51 and FKBP52 were superimposed onto FKBP12. FKBP12 (green), 51-FK1 (blue), and 52-FK1 (red) are similar. The structures of 51-FK2 (cyan) and 52-FK2 (yellow) are more closed than the others. (b) TPR domains are superimposed onto the TPR domains of FKBP52. FKBP52 is shown in yellow, FKBP51 is shown in cyan, Hop is shown in green, Cyp40 is shown in purple, and PP5 is shown in pink. The conformations of all the TPR domains are similar, containing six -helices ( 1- 6). The orientations of the extra -helix ( 7) are different. (c) Superposition of the structures of TPR domains and the 7-helixes of FKBP51 (blue) and FKBP52 (yellow). Gln-333, Phe-335, and Ala-365 of FKBP52 are replaced by Arg-331, Tyr-333, and Leu-363 in FKBP51, which may be responsible for the differential binding pattern of FKBPs to Hsp90. The side chain of Ile-400 of FKBP52, corresponding to Ala-398 of FKBP51, will clash with Phe-369, and this may cause the different orientations of the 7-helix.

Figure 3.
Fig. 3. (a) Stereo view of the hydrogen bonds between FK1 and FK2 of FKBP52. Hydrogen bonds at the interface of FK1 and FK2 form a complicated network, which stabilizes the conformation. Residues in FK1 are shown in red, residues in FK2 are shown in yellow, and residues in the loop are shown in white. (b and c) Stereo view of the MEEVD peptide bound to molecules A (b)and B(c) of C(145-459). The omit electron-density map is contoured at 0.7 above the mean. Residues of the peptide are shown in white, and residues of the TPR domain are shown in yellow. Residues involved in important interactions are shown in ball-and-stick representation. Hydrogen bonds are shown as dotted lines.

Figures were selected by an automated process.