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PDBsum entry 1qss
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Pore analysis for: 1qss calculated with  MOLE 2.0
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PDB id
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1qss
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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4 pores,
coloured by radius |
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5 pores,
coloured by radius
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5 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.69 |
3.70 |
27.5 |
-0.92 |
-0.49 |
18.0 |
91 |
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2 |
2 |
1 |
4 |
1 |
0 |
0 |
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DC 109 B DG 110 B DA 203 C DC 204 C
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2 |
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1.23 |
1.35 |
35.9 |
-1.68 |
-0.60 |
23.9 |
83 |
5 |
3 |
0 |
4 |
1 |
0 |
0 |
DC 106 B DG 107 B DG 108 B DC 109 B DG 110 B DC
210 C DG 211 C DT 212 C DG 213 C DG 214 C DT 215 C
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3 |
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2.13 |
2.39 |
44.2 |
-2.83 |
-0.48 |
36.5 |
82 |
8 |
5 |
0 |
3 |
1 |
1 |
0 |
DG3 113 A MG 1002 A DG 110 B DC 111 B DDG 112 B
DC 204 C DC 205 C DG 206 C
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4 |
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2.15 |
2.44 |
48.3 |
-2.55 |
-0.47 |
32.8 |
86 |
9 |
4 |
1 |
3 |
0 |
1 |
0 |
DG3 113 A MG 1002 A DC 109 B DG 110 B DC 111 B
DDG 112 B DA 203 C DC 204 C DC 205 C DG 206 C
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5 |
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1.20 |
1.35 |
57.2 |
-1.34 |
-0.55 |
19.5 |
85 |
6 |
3 |
1 |
3 |
0 |
0 |
0 |
DC 106 B DG 107 B DG 108 B DC 109 B DG 110 B DA
203 C DC 204 C DC 210 C DG 211 C DT 212 C DG 213
C DG 214 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program