PDBsum entry 1qm9 Go to PDB code:  Tunnel analysis for: 1qm9 calculated with MOLE 2.0 PDB id 1qm9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.95 2.00 15.7 -1.19 -0.33 15.3 91 4 1 2 1 0 1 0   2 1.90 1.94 20.0 -1.71 -0.59 18.1 93 3 2 5 2 0 0 0   3 1.58 1.80 23.2 -0.95 -0.36 13.6 90 2 2 4 1 1 1 0   4 1.90 1.95 24.5 -1.94 -0.50 22.5 90 2 2 3 1 0 1 0   5 1.66 1.66 16.1 -0.21 0.10 11.6 80 2 0 4 3 1 0 0   6 1.66 1.66 23.0 -1.33 -0.45 10.8 79 2 1 2 2 0 1 0   7 1.25 1.49 19.3 1.12 0.26 5.3 81 1 0 2 5 1 1 0   8 1.24 1.51 20.6 1.20 0.25 3.6 82 1 0 1 5 1 1 0   9 1.33 1.34 21.6 1.78 0.39 3.6 78 1 1 0 8 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.