PDBsum entry 1qcf Go to PDB code:  Tunnel analysis for: 1qcf calculated with MOLE 2.0 PDB id 1qcf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 2.77 27.1 1.10 0.26 10.8 84 1 2 1 12 1 0 0  PP1 532 A 2 1.32 2.76 29.9 1.46 0.32 8.0 83 1 1 1 11 1 0 0  PP1 532 A 3 1.21 1.29 33.3 0.35 0.01 8.7 77 3 2 1 7 3 0 0  PP1 532 A 4 1.22 1.29 46.2 -0.15 -0.08 12.1 82 3 2 2 7 2 0 0   5 1.24 1.57 19.7 0.48 0.12 6.2 87 2 1 2 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.