PDBsum entry 1qat Go to PDB code:  Tunnel analysis for: 1qat calculated with MOLE 2.0 PDB id 1qat Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.21 17.5 -0.53 -0.02 10.3 84 2 0 2 4 0 2 0   2 1.36 1.36 18.7 -1.51 -0.56 14.2 83 2 1 3 0 1 0 1   3 1.36 1.36 16.8 -1.20 -0.63 9.3 84 2 1 2 2 1 0 0   4 1.33 1.33 19.7 -1.30 -0.54 9.9 88 2 1 3 0 1 0 0   5 1.34 1.34 21.4 -1.24 -0.47 14.6 80 2 1 2 0 1 0 1   6 1.16 1.50 27.1 0.14 -0.09 12.4 66 3 1 0 6 2 1 1   7 1.18 1.36 38.4 -0.44 -0.15 13.8 71 4 3 2 7 2 1 1   8 1.31 1.71 19.5 -0.72 -0.09 10.1 72 1 2 3 5 2 1 1   9 1.19 1.19 18.3 -1.90 -0.44 29.4 79 2 2 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.