PDBsum entry 1qai Go to PDB code:  Tunnel analysis for: 1qai calculated with MOLE 2.0 PDB id 1qai Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 2.66 19.1 -0.75 0.46 22.3 68 4 2 0 3 3 1 0   2 1.58 2.83 21.4 -0.72 0.34 17.0 69 5 2 1 3 3 1 0   3 1.76 1.80 22.1 -1.23 0.13 16.5 67 5 1 2 2 3 1 0   4 1.76 1.79 24.0 -1.76 -0.18 14.6 66 2 3 2 1 3 2 0   5 1.72 1.86 29.7 -0.14 0.15 7.6 69 2 0 2 3 2 1 0  DT 7 C DG 8 C 6 1.37 1.89 15.1 2.84 0.80 0.8 59 0 0 0 7 1 0 0   7 1.18 1.47 15.5 -0.59 -0.38 9.4 73 2 0 1 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.