PDBsum entry 1q9y Go to PDB code:  Pore analysis for: 1q9y calculated with MOLE 2.0 PDB id 1q9y Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.75 2.97 37.9 -0.47 -0.04 9.9 82 4 1 4 3 2 0 0  DT 935 P DA 936 P DC 937 P DC 908 T DG 910 T 2 1.88 1.85 132.9 -1.93 -0.29 27.9 80 10 8 5 7 4 0 0  CA 940 A DT 935 P DA 936 P DC 937 P DOC 938 P DCP 939 P DC 908 T DG 910 T 3 1.85 1.84 142.8 -2.00 -0.29 27.3 81 13 9 8 7 4 0 0  CA 940 A DCP 939 P 4 1.34 1.37 33.3 -1.05 -0.59 10.5 82 5 0 2 0 1 1 0  DG 927 P DG 932 P DC 933 P DC 916 T DA 917 T DG 918 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.