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PDBsum entry 1q5k
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* Residue conservation analysis
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PDB id:
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Transferase
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Title:
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Crystal structure of glycogen synthase kinase 3 in complexed with inhibitor
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Structure:
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Glycogen synthase kinase-3 beta. Chain: a, b. Synonym: gsk-3 beta. Engineered: yes
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Source:
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Homo sapiens. Human. Organism_taxid: 9606. Gene: gsk3b. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_cell: high five cells.
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Biol. unit:
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Dimer (from
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Resolution:
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1.94Å
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R-factor:
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0.222
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R-free:
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0.242
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Authors:
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R.Bhat,Y.Xue,S.Berg,S.Hellberg,M.Ormo,Y.Nilsson,A.C.Radesater, E.Jerning,P.O.Markgren,T.Borgegard,M.Nylof,A.Gimenez-Cassina, F.Hernandez,J.J.Lucas,J.Diaz-Mido,J.Avila
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Key ref:
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R.Bhat
et al.
(2003).
Structural insights and biological effects of glycogen synthase kinase 3-specific inhibitor AR-A014418.
J Biol Chem,
278,
45937-45945.
PubMed id:
DOI:
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Date:
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08-Aug-03
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Release date:
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10-Aug-04
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PROCHECK
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Headers
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References
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P49841
(GSK3B_HUMAN) -
Glycogen synthase kinase-3 beta from Homo sapiens
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Seq: Struc:
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420 a.a.
345 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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Enzyme class 1:
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E.C.2.7.11.1
- non-specific serine/threonine protein kinase.
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Reaction:
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1.
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L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H+
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2.
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L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H+
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L-seryl-[protein]
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+
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ATP
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=
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O-phospho-L-seryl-[protein]
Bound ligand (Het Group name = )
matches with 41.18% similarity
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ADP
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+
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H(+)
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L-threonyl-[protein]
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+
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ATP
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=
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O-phospho-L-threonyl-[protein]
Bound ligand (Het Group name = )
matches with 41.18% similarity
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+
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ADP
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+
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H(+)
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Enzyme class 2:
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E.C.2.7.11.26
- [tau protein] kinase.
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Reaction:
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1.
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L-seryl-[tau protein] + ATP = O-phospho-L-seryl-[tau protein] + ADP + H+
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2.
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L-threonyl-[tau protein] + ATP = O-phospho-L-threonyl-[tau protein] + ADP + H+
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L-seryl-[tau protein]
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+
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ATP
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=
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O-phospho-L-seryl-[tau protein]
Bound ligand (Het Group name = )
matches with 41.18% similarity
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+
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ADP
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+
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H(+)
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L-threonyl-[tau protein]
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+
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ATP
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=
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O-phospho-L-threonyl-[tau protein]
Bound ligand (Het Group name = )
matches with 41.18% similarity
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+
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ADP
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+
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H(+)
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Note, where more than one E.C. class is given (as above), each may
correspond to a different protein domain or, in the case of polyprotein
precursors, to a different mature protein.
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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DOI no:
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J Biol Chem
278:45937-45945
(2003)
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PubMed id:
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Structural insights and biological effects of glycogen synthase kinase 3-specific inhibitor AR-A014418.
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R.Bhat,
Y.Xue,
S.Berg,
S.Hellberg,
M.Ormö,
Y.Nilsson,
A.C.Radesäter,
E.Jerning,
P.O.Markgren,
T.Borgegård,
M.Nylöf,
A.Giménez-Cassina,
F.Hernández,
J.J.Lucas,
J.Díaz-Nido,
J.Avila.
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ABSTRACT
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Glycogen synthase kinase 3 (GSK3) is a serine/threonine kinase that has been
implicated in pathological conditions such as diabetes and Alzheimer's disease.
We report the characterization of a GSK3 inhibitor, AR-A014418, which inhibits
GSK3 (IC50 = 104 +/- 27 nM), in an ATP-competitive manner (Ki = 38 nM).
AR-A014418 does not significantly inhibit cdk2 or cdk5 (IC50 > 100 microM) or 26
other kinases demonstrating high specificity for GSK3. We report the
co-crystallization of AR-A014418 with the GSK3beta protein and provide a
description of the interactions within the ATP pocket, as well as an
understanding of the structural basis for the selectivity of AR-A014418.
AR-A014418 inhibits tau phosphorylation at a GSK3-specific site (Ser-396) in
cells stably expressing human four-repeat tau protein. AR-A014418 protects N2A
neuroblastoma cells against cell death mediated by inhibition of the
phosphatidylinositol 3-kinase/protein kinase B survival pathway. Furthermore,
AR-A014418 inhibits neurodegeneration mediated by beta-amyloid peptide in
hippocampal slices. AR-A014418 may thus have important applications as a tool to
elucidate the role of GSK3 in cellular signaling and possibly in Alzheimer's
disease. AR-A014418 is the first compound of a family of specific inhibitors of
GSK3 that does not significantly inhibit closely related kinases such as cdk2 or
cdk5.
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Selected figure(s)
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Figure 4.
FIG. 4. Binding of AR-A014418 to GSK3 Left, surface
representation of the inhibitor binding pocket. Right,
interactions between the ligand and the protein. For clarity
only residues in the linker/hinge region and those involved in
the important ion-pair interaction (Lys-85, Glu-97, and Asp-200)
are shown. Hydrogen bonds between the inhibitor and the protein
molecule are shown as yellow lines. Single-letter codes are used
for amino acids.
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Figure 7.
FIG. 7. Surface representation of the ATP pocket of GSK3
-AR-A014418 (in cyan),
and that of cdk2-ATP (magenta).
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The above figures are
reprinted
by permission from the ASBMB:
J Biol Chem
(2003,
278,
45937-45945)
copyright 2003.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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A.Valerio,
P.Bertolotti,
A.Delbarba,
C.Perego,
M.Dossena,
M.Ragni,
P.Spano,
M.O.Carruba,
M.G.De Simoni,
and
E.Nisoli
(2011).
Glycogen synthase kinase-3 inhibition reduces ischemic cerebral damage, restores impaired mitochondrial biogenesis and prevents ROS production.
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J Neurochem,
116,
1148-1159.
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G.E.Atilla-Gokcumen,
L.Di Costanzo,
and
E.Meggers
(2011).
Structure of anticancer ruthenium half-sandwich complex bound to glycogen synthase kinase 3β.
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J Biol Inorg Chem,
16,
45-50.
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PDB code:
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J.L.Johnson,
S.G.Rupasinghe,
F.Stefani,
M.A.Schuler,
and
E.Gonzalez de Mejia
(2011).
Citrus flavonoids luteolin, apigenin, and quercetin inhibit glycogen synthase kinase-3β enzymatic activity by lowering the interaction energy within the binding cavity.
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J Med Food,
14,
325-333.
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K.Saeki,
M.Machida,
Y.Kinoshita,
R.Takasawa,
and
S.Tanuma
(2011).
Glycogen synthase kinase-3β2 has lower phosphorylation activity to tau than glycogen synthase kinase-3β1.
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Biol Pharm Bull,
34,
146-149.
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S.Y.Lu,
Y.J.Jiang,
J.Lv,
J.W.Zou,
and
T.X.Wu
(2011).
Role of bridging water molecules in GSK3β-inhibitor complexes: insights from QM/MM, MD, and molecular docking studies.
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J Comput Chem,
32,
1907-1918.
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A.J.Lough,
J.W.Hicks,
J.F.Valliant,
A.A.Wilson,
and
N.Vasdev
(2010).
N-(4-Meth-oxy-phen-yl)-N'-(5-nitro-1,3-thia-zol-2-yl)urea.
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Acta Crystallogr Sect E Struct Rep Online,
66,
o2339.
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A.Schneider,
P.Falkai,
and
A.Papassotiropoulos
(2010).
[Molecular principles of tau-induced toxicity: new experimental therapy strategies for treatment of Alzheimer's disease].
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Nervenarzt,
81,
1289.
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E.L.Clayton,
N.Sue,
K.J.Smillie,
T.O'Leary,
N.Bache,
G.Cheung,
A.R.Cole,
D.J.Wyllie,
C.Sutherland,
P.J.Robinson,
and
M.A.Cousin
(2010).
Dynamin I phosphorylation by GSK3 controls activity-dependent bulk endocytosis of synaptic vesicles.
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Nat Neurosci,
13,
845-851.
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I.Lassot,
I.Robbins,
M.Kristiansen,
R.Rahmeh,
F.Jaudon,
M.M.Magiera,
S.Mora,
L.Vanhille,
A.Lipkin,
B.Pettmann,
J.Ham,
and
S.Desagher
(2010).
Trim17, a novel E3 ubiquitin-ligase, initiates neuronal apoptosis.
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Cell Death Differ,
17,
1928-1941.
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J.Avila,
F.Wandosell,
and
F.Hernández
(2010).
Role of glycogen synthase kinase-3 in Alzheimer's disease pathogenesis and glycogen synthase kinase-3 inhibitors.
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Expert Rev Neurother,
10,
703-710.
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L.B.Bennett,
K.H.Taylor,
G.L.Arthur,
F.B.Rahmatpanah,
S.I.Hooshmand,
and
C.W.Caldwell
(2010).
Epigenetic regulation of WNT signaling in chronic lymphocytic leukemia.
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Epigenomics,
2,
53-70.
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L.Santo,
S.Vallet,
T.Hideshima,
D.Cirstea,
H.Ikeda,
S.Pozzi,
K.Patel,
Y.Okawa,
G.Gorgun,
G.Perrone,
E.Calabrese,
M.Yule,
M.Squires,
M.Ladetto,
M.Boccadoro,
P.G.Richardson,
N.C.Munshi,
K.C.Anderson,
and
N.Raje
(2010).
AT7519, A novel small molecule multi-cyclin-dependent kinase inhibitor, induces apoptosis in multiple myeloma via GSK-3beta activation and RNA polymerase II inhibition.
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Oncogene,
29,
2325-2336.
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M.Bartolini,
and
V.Andrisano
(2010).
Strategies for the inhibition of protein aggregation in human diseases.
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Chembiochem,
11,
1018-1035.
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M.V.Hoang,
L.E.Smith,
and
D.R.Senger
(2010).
Moderate GSK-3β inhibition improves neovascular architecture, reduces vascular leakage, and reduces retinal hypoxia in a model of ischemic retinopathy.
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Angiogenesis,
13,
269-277.
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P.Mishra,
S.Senthivinayagam,
A.Rana,
and
B.Rana
(2010).
Glycogen Synthase Kinase-3beta regulates Snail and beta-catenin during gastrin-induced migration of gastric cancer cells.
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J Mol Signal,
5,
9.
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R.Wong,
A.M.Aponte,
C.Steenbergen,
and
E.Murphy
(2010).
Cardioprotection leads to novel changes in the mitochondrial proteome.
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Am J Physiol Heart Circ Physiol,
298,
H75-H91.
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S.Phukan,
V.S.Babu,
A.Kannoji,
R.Hariharan,
and
V.N.Balaji
(2010).
GSK3beta: role in therapeutic landscape and development of modulators.
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Br J Pharmacol,
160,
1.
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S.W.Perry,
J.Barbieri,
N.Tong,
O.Polesskaya,
S.Pudasaini,
A.Stout,
R.Lu,
M.Kiebala,
S.B.Maggirwar,
and
H.A.Gelbard
(2010).
Human immunodeficiency virus-1 Tat activates calpain proteases via the ryanodine receptor to enhance surface dopamine transporter levels and increase transporter-specific uptake and Vmax.
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J Neurosci,
30,
14153-14164.
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T.Takadera,
Y.Nakajima,
and
Y.Kanai
(2010).
Colchicine-induced apoptosis was prevented by glycogen synthase kinase-3 inhibitors in PC12 cells.
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Cell Mol Neurobiol,
30,
863-868.
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X.Ma,
B.Hibbert,
B.Dhaliwal,
T.Seibert,
Y.X.Chen,
X.Zhao,
and
E.R.O'Brien
(2010).
Delayed re-endothelialization with rapamycin-coated stents is rescued by the addition of a glycogen synthase kinase-3beta inhibitor.
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Cardiovasc Res,
86,
338-345.
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Z.Wang,
M.Iwasaki,
F.Ficara,
C.Lin,
C.Matheny,
S.H.Wong,
K.S.Smith,
and
M.L.Cleary
(2010).
GSK-3 promotes conditional association of CREB and its coactivators with MEIS1 to facilitate HOX-mediated transcription and oncogenesis.
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Cancer Cell,
17,
597-608.
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B.De Rybel,
D.Audenaert,
G.Vert,
W.Rozhon,
J.Mayerhofer,
F.Peelman,
S.Coutuer,
T.Denayer,
L.Jansen,
L.Nguyen,
I.Vanhoutte,
G.T.Beemster,
K.Vleminckx,
C.Jonak,
J.Chory,
D.Inzé,
E.Russinova,
and
T.Beeckman
(2009).
Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling.
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Chem Biol,
16,
594-604.
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D.Paquet,
R.Bhat,
A.Sydow,
E.M.Mandelkow,
S.Berg,
S.Hellberg,
J.Fälting,
M.Distel,
R.W.Köster,
B.Schmid,
and
C.Haass
(2009).
A zebrafish model of tauopathy allows in vivo imaging of neuronal cell death and drug evaluation.
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J Clin Invest,
119,
1382-1395.
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E.E.Congdon,
Y.H.Figueroa,
L.Wang,
G.Toneva,
E.Chang,
J.Kuret,
C.Conrad,
and
K.E.Duff
(2009).
Inhibition of tau polymerization with a cyanine dye in two distinct model systems.
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J Biol Chem,
284,
20830-20839.
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G.V.Rayasam,
V.K.Tulasi,
R.Sodhi,
J.A.Davis,
and
A.Ray
(2009).
Glycogen synthase kinase 3: more than a namesake.
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Br J Pharmacol,
156,
885-898.
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I.N.Gaisina,
F.Gallier,
A.V.Ougolkov,
K.H.Kim,
T.Kurome,
S.Guo,
D.Holzle,
D.N.Luchini,
S.Y.Blond,
D.D.Billadeau,
and
A.P.Kozikowski
(2009).
From a natural product lead to the identification of potent and selective benzofuran-3-yl-(indol-3-yl)maleimides as glycogen synthase kinase 3beta inhibitors that suppress proliferation and survival of pancreatic cancer cells.
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J Med Chem,
52,
1853-1863.
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K.H.Kim,
I.Gaisina,
F.Gallier,
D.Holzle,
S.Y.Blond,
A.Mesecar,
and
A.P.Kozikowski
(2009).
Use of molecular modeling, docking, and 3D-QSAR studies for the determination of the binding mode of benzofuran-3-yl-(indol-3-yl)maleimides as GSK-3beta inhibitors.
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J Mol Model,
15,
1463-1479.
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K.Ning,
L.C.Miller,
H.A.Laidlaw,
K.R.Watterson,
J.Gallagher,
C.Sutherland,
and
M.L.Ashford
(2009).
Leptin-dependent phosphorylation of PTEN mediates actin restructuring and activation of ATP-sensitive K+ channels.
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| |
J Biol Chem,
284,
9331-9340.
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S.Kruggel,
and
T.Lemcke
(2009).
Generation and evaluation of a homology model of PfGSK-3.
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Arch Pharm (Weinheim),
342,
327-332.
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S.Mamaghani,
S.Patel,
and
D.W.Hedley
(2009).
Glycogen synthase kinase-3 inhibition disrupts nuclear factor-kappaB activity in pancreatic cancer, but fails to sensitize to gemcitabine chemotherapy.
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| |
BMC Cancer,
9,
132.
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T.B.Nguyen,
G.R.Lucero,
G.Chana,
B.J.Hult,
E.T.Tatro,
E.Masliah,
I.Grant,
C.L.Achim,
and
I.P.Everall
(2009).
Glycogen synthase kinase-3beta (GSK-3beta) inhibitors AR-A014418 and B6B3O prevent human immunodeficiency virus-mediated neurotoxicity in primary human neurons.
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| |
J Neurovirol,
15,
434-438.
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|
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V.Bilim,
A.Ougolkov,
K.Yuuki,
S.Naito,
H.Kawazoe,
A.Muto,
M.Oya,
D.Billadeau,
T.Motoyama,
and
Y.Tomita
(2009).
Glycogen synthase kinase-3: a new therapeutic target in renal cell carcinoma.
|
| |
Br J Cancer,
101,
2005-2014.
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W.W.Min,
C.J.Yuskaitis,
Q.Yan,
C.Sikorski,
S.Chen,
R.S.Jope,
and
R.P.Bauchwitz
(2009).
Elevated glycogen synthase kinase-3 activity in Fragile X mice: key metabolic regulator with evidence for treatment potential.
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| |
Neuropharmacology,
56,
463-472.
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A.Kannoji,
S.Phukan,
V.Sudher Babu,
and
V.N.Balaji
(2008).
GSK3beta: a master switch and a promising target.
|
| |
Expert Opin Ther Targets,
12,
1443-1455.
|
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|
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|
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D.Simón,
M.J.Benitez,
A.Gimenez-Cassina,
J.J.Garrido,
R.V.Bhat,
J.Díaz-Nido,
and
F.Wandosell
(2008).
Pharmacological inhibition of GSK-3 is not strictly correlated with a decrease in tyrosine phosphorylation of residues 216/279.
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| |
J Neurosci Res,
86,
668-674.
|
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|
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|
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G.E.Atilla-Gokcumen,
N.Pagano,
C.Streu,
J.Maksimoska,
P.Filippakopoulos,
S.Knapp,
and
E.Meggers
(2008).
Extremely tight binding of a ruthenium complex to glycogen synthase kinase 3.
|
| |
Chembiochem,
9,
2933-2936.
|
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PDB code:
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J.M.Boggs,
W.Gao,
and
Y.Hirahara
(2008).
Signal transduction pathways involved in interaction of galactosylceramide/sulfatide-containing liposomes with cultured oligodendrocytes and requirement for myelin basic protein and glycosphingolipids.
|
| |
J Neurosci Res,
86,
1448-1458.
|
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|
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|
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W.Wilson,
and
A.S.Baldwin
(2008).
Maintenance of constitutive IkappaB kinase activity by glycogen synthase kinase-3alpha/beta in pancreatic cancer.
|
| |
Cancer Res,
68,
8156-8163.
|
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|
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|
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Y.Xia,
C.Z.Wang,
J.Liu,
N.C.Anastasio,
and
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PDB code:
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
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only a partial list as not all journals are covered by
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Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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}
}
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