PDBsum entry 1q3w

Pore analysis for: 1q3w calculated with

MOLE 2.0

PDB id

1q3w

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.34

1.64

32.4

-0.95

-0.30

17.3

88

3

3

4

3

1

1

0

2

1.24

2.33

36.5

-0.82

-0.37

14.9

85

4

3

5

2

2

1

0

3

1.25

1.86

38.7

-0.19

-0.06

12.9

83

5

2

4

5

2

1

0

4

1.24

1.85

102.9

-1.37

-0.42

18.0

88

7

5

6

3

2

2

0

5

2.06

2.06

103.5

-1.12

-0.29

13.8

86

7

2

4

6

2

3

0

6

2.12

2.47

118.8

-1.37

-0.44

12.4

80

7

1

4

3

2

2

0

7

2.07

2.48

140.0

-1.98

-0.46

23.7

85

9

3

4

2

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.