spacer
spacer

PDBsum entry 1q3h

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1q3h calculated with MOLE 2.0 PDB id
1q3h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.89 2.99 29.9 -1.87 -0.33 17.0 89 4 2 5 0 1 0 0  
2 1.40 1.57 33.8 -0.22 -0.19 8.5 77 1 3 3 4 3 0 0  ANP 202 B
3 1.72 2.12 43.9 -1.74 -0.57 18.0 85 4 3 4 0 2 1 0  
4 1.41 1.56 49.8 -0.59 -0.22 11.3 82 4 4 6 5 4 0 0  ANP 202 B
5 1.41 1.65 60.8 -0.68 -0.18 10.4 82 5 4 7 5 4 0 0  ANP 202 B
6 1.30 2.81 66.0 0.28 0.44 15.5 79 6 2 3 9 3 0 0  
7 2.41 4.74 69.3 -2.76 -0.60 27.6 87 8 3 10 2 1 0 0  
8 1.34 3.26 70.7 -0.66 0.25 20.1 78 6 4 5 10 4 0 0  
9 1.37 2.66 94.6 0.93 0.64 13.4 80 5 4 4 16 5 0 0  
10 1.50 3.14 106.2 -1.01 -0.18 17.4 83 7 6 6 7 4 0 0  ANP 202 B MG 674 B
11 1.51 2.72 108.2 -1.03 -0.19 18.5 83 7 8 8 6 4 0 0  
12 1.50 2.73 117.5 -1.41 -0.29 19.1 82 5 11 7 6 4 0 0  
13 1.32 2.98 30.3 -0.98 -0.51 9.5 85 1 1 3 3 2 0 0  ANP 203 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer