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Ligand clusters for UniProt code P11349

Ligand clusters for P11349: Respiratory nitrate reductase 1 beta chain OS=Escherichia coli (strain K12) GN=narH PE=1 SV=3

Top 6 (of 7) ligand clusters
Cluster 1.
3 ligand types
10 ligands
Cluster 2.
1 ligand type
10 ligands
Cluster 3.
1 ligand type
5 ligands
Cluster 4.
2 ligand types
11 ligands
Cluster 5.
2 ligand types
11 ligands
Cluster 6.
1 ligand type
11 ligands
Representative protein: 1q16B  
 

Structures

PDB   Schematic diagram
1q16B    
1y4zB    
3ir7B    
1y5iB    
3ir5B    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: AGA × 4
(1s)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Pentanoyloxy)methyl]ethyl octanoate
PDB codes: 1q16(B), 1y4z(B), 1y5i(B), 1y5n(B).


 
2. Ligand: 3PH × 2
1,2-Diacyl-Glycerol-3-Sn-Phosphate
PDB codes: 1siw(B), 1y5l(B).


 
3. Ligand: AGA × 4
(1s)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Pentanoyloxy)methyl]ethyl octanoate
PDB codes: 3egw(B), 3ir5(B), 3ir6(B), 3ir7(B).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: HEM × 10
Protoporphyrin IX containing fe
PDB codes: 1q16(B), 1siw(B), 1y4z(B), 1y5i(B), 1y5l(B), 1y5n(B), 3egw(B), 3ir5(B), 3ir6(B), 3ir7(B).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: 3PH × 5
1,2-Diacyl-Glycerol-3-Sn-Phosphate
PDB codes: 1q16(B), 1siw(B), 1y5i(B), 1y5n(B), 3egw(B).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: SF4 × 10
Iron/sulfur cluster
PDB codes: 1q16(B), 1r27(B), 1siw(B), 1y4z(B), 1y5i(B), 1y5l(B), 1y5n(B), 3ir5(B), 3ir6(B), 3ir7(B).


 
2. Ligand: F3S × 1
Fe3-S4 cluster
PDB code: 3egw(B).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: SF4 × 10
Iron/sulfur cluster
PDB codes: 1q16(B), 1r27(B), 1siw(B), 1y5i(B), 1y5l(B), 1y5n(B), 3egw(B), 3ir5(B), 3ir6(B), 3ir7(B).


 
2. Ligand: F3S × 1
Fe3-S4 cluster
PDB code: 1y4z(B).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 11
Iron/sulfur cluster
PDB codes: 1q16(B), 1r27(B), 1siw(B), 1y4z(B), 1y5i(B), 1y5l(B), 1y5n(B), 3egw(B), 3ir5(B), 3ir6(B), 3ir7(B).

 

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