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Ligand clusters for UniProt code P09152

Ligand clusters for P09152: Respiratory nitrate reductase 1 alpha chain OS=Escherichia coli (strain K12) GN=narG PE=1 SV=4

3 ligand clusters
Cluster 1.
7 ligand types
30 ligands
Cluster 2.
3 ligand types
10 ligands
Cluster 3.
1 ligand type
10 ligands
Representative protein: 1q16A  
 

Structures

PDB   Schematic diagram
1q16A    
1y4zA    
1y5iA    
3egwA    
1r27A    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: GDP × 1
Guanosine-5'-Diphosphate
PDB code: 1siw(A).


 
2. Ligand: MGD × 2
2-Amino-5,6-Dimercapto-7-Methyl-3,7,8a,9-Tetrahydro-8- Oxa-1,3,9,10-Tetraaza-Anthracen-4-
One guanosine dinucleotide
PDB codes: 1r27(A),


 
3. Ligand: MD1 × 15
Phosphoric acid 4-(2-Amino-4-Oxo-3,4,5,6,-Tetrahydro- Pteridin-6-Yl)-2-Hydroxy-3,4-Dimercapto-But-
3-En-Yl ester guanylate ester
PDB codes: 1q16(A), 1y4z(A), 1y5i(A), 1y5l(A), 1y5n(A), 3egw(A), 3ir5(A), 3ir7(A),

6mo
 
4. Metal: 6MO × 8
PDB codes: 1q16(A), 1y4z(A), 1y5i(A), 1y5l(A), 1y5n(A), 3egw(A), 3ir5(A), 3ir7(A).


 
5. Ligand: GDP × 2
Guanosine-5'-Diphosphate
PDB codes: 3ir6(A),


 
6. Ligand: MGD × 1
2-Amino-5,6-Dimercapto-7-Methyl-3,7,8a,9-Tetrahydro-8- Oxa-1,3,9,10-Tetraaza-Anthracen-4-
One guanosine dinucleotide
PDB code: 3egw(A).

_Mo
 
7. Metal: _MO × 1
PDB code: 1r27(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: AGA × 4
(1s)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Pentanoyloxy)methyl]ethyl octanoate
PDB codes: 1q16(A), 1y4z(A), 1y5i(A), 1y5n(A).


 
2. Ligand: 3PH × 2
1,2-Diacyl-Glycerol-3-Sn-Phosphate
PDB codes: 1siw(A), 1y5l(A).


 
3. Ligand: AGA × 4
(1s)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Pentanoyloxy)methyl]ethyl octanoate
PDB codes: 3egw(A), 3ir5(A), 3ir6(A), 3ir7(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 10
Iron/sulfur cluster
PDB codes: 1q16(A), 1r27(A), 1siw(A), 1y4z(A), 1y5i(A), 1y5l(A), 1y5n(A), 3egw(A), 3ir5(A), 3ir7(A).

 

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