PDBsum entry 1pys Go to PDB code:  Tunnel analysis for: 1pys calculated with MOLE 2.0 PDB id 1pys Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.64 32.0 -2.01 -0.41 31.2 75 4 5 0 3 0 3 0   2 1.17 1.55 20.0 0.36 0.11 4.9 71 1 0 1 5 2 1 0   3 1.21 1.28 23.7 -1.40 -0.43 19.6 78 3 3 0 4 1 0 0   4 1.21 1.27 24.4 -1.56 -0.55 23.3 80 3 4 0 4 0 0 0   5 1.17 1.37 20.1 -1.25 -0.03 21.3 70 3 2 0 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.